Job Description P77337 Confidence 99.92% Date Thu Jan 5 12:27:58 GMT 2012 Rank 22 Aligned Residues 315 % Identity 17% Template c2bryA_ PDB info PDB header:transport Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology PDBTitle: crystal structure of the native monooxygenase domain of2 mical at 1.45 a resolution Resolution 1.45 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	F	D	A	I	V	V	G	A	G	V	A	G	S	V	A	A	L	V	M	A	R	A	G	L	D	V	L	V	I	E	R	G	D	S	A	G	C	K	N	M	T	G	G	R	L	Y	A	H	T	L	E	A	I	I	P	G	F	A	V	S	A	P	V	E	R	K	V	T	R	E	K	I	S	F	L	T	E	E
Query Conservation
Alig confidence																																					.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	N	T	K	C	L	V	V	G	A	G	P	C	G	L	R	A	A	V	E	L	A	L	L	G	A	R	V	V	L	V	E	K	R	I	.	.	.	.	K	F	S	R	H	N	V	L	H	L	W	P	F	T	I	H	D	L	R	A	L	G	A	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T									S													T	T								S		S	.	.	.	.	S																			T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.									.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.
Query Sequence		S	A	V	T	L	D	F	H	R	E	Q	P	D	V	P	Q	H	A	S	Y	T	V	L	R	N	R	L	D	P	W	L	M	E	Q	A	E	Q	A	G	A	Q	F	I	P	G	V	R	V	D	A	L	V	R	E	G	N	K	V	T	G	V	Q	.	.	.	.	.	.	.	.	A	G	D	D	I	L	E	A	N	V
Query Conservation																																																																.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	F	Y	G	R	F	C	T	G	T	L	D	H	I	S	I	R	Q	L	Q	L	L	L	L	K	V	A	L	L	L	G	V	E	I	H	W	G	V	K	F	T	G	L	Q	P	P	P	R	K	G	S	G	W	R	A	Q	L	Q	P	N	P	P	A	Q	L	A	S	Y	E	F	D	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.			T	T	T	T		T	T																				T	T						S											S	T	T			B						S								T			B	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	L	A	D	G	V	N	S	M	L	G	R	S	L	G	M	V	P	A	S	D	P	H	H	Y	A	V	G	V	K	E	V	I	G	L	T	P	E	Q	I	N	D	R	F	N	I	T	G	E	E	G	A	A	W	L	F	A	G	S	P	S	D	G	L	M	G	G	G	F	L	Y	T	N	K	D	S	I	S	L
Query Conservation
Alig confidence																									.	.	.
Template Conservation																									.	.	.
Template Sequence		L	I	S	A	A	G	G	K	F	V	P	E	G	F	T	I	R	E	M	R	G	K	L	.	.	.	A	I	G	I	T	A	N	F	V	N	G	R	T	V	E	E	T	Q	V	P	E	I	S	G	Y	N	Q	K	F	F	Q	S	L	L	K	A	T	G	I	D	L	E	N	I	V	Y	Y	K	D	E	T	H	Y	F
Template Known Secondary structure								T	T				T	T									S		.	.	.																		T	S			B					S	S																					S	S
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		236	.	.	.	240	.	.	.	.	.	.	.	.																		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.																.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	V	C	G	L	G	D	I	A	H	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	V	P	Q	M	L	E	D	F	K	Q	H	P	A	I	R	P	L	I	S	G	G	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	Y	S	A	H	M	V	P	E
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	M	T	A	K	K	Q	C	L	L	R	L	G	V	L	R	Q	D	L	S	E	T	D	Q	L	L	G	K	A	N	V	V	P	E	A	L	Q	R	F	A	R	A	A	A	D	F	A	T	H	G	K	L	G	K	L	E	F	A	Q	D	A	R	G	R	P	D	V	A	A	F	D	F	T	S	M	M	R	A	E	S
Template Known Secondary structure													T	T	S	B	S	S			S	S					T	S	T	T	T	B																	T	T	T	T	T		S			B		B		T	T	S	S	B								S						S
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	L	A	M	V	P	Q	L	V	N	E	G	V	M	I	V	G	D	A	A	G	F	C	L	N	L	G	F	T	V	R	G	M	D	L	A	I	A	S	A	Q	A	A	A	T	T	V	I	A	A	K	E	R	A	D	F	S	A	S	S	L	A	Q	Y	K	R	E	L	E
Query Conservation
Alig confidence																														.	.																				.
Template Conservation																														.	.																				.
Template Sequence		S	A	R	V	Q	E	K	H	G	A	R	L	L	L	G	L	V	G	D	C	L	V	E	P	F	W	P	L	.	.	G	T	G	V	A	R	G	F	L	A	A	F	D	A	A	W	M	V	K	.	R	W	A	E	G	A	G	P	L	E	V	L	A	E	R	E	S	L	Y	Q
Template Known Secondary structure		S							T	T									G	G	G	T	B				G	G	G	.	.																				.				T	T															T
Template Predicted Secondary structure																														.	.																				.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.			.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.		.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions