Job Description P77337 Confidence 99.74% Date Thu Jan 5 12:27:58 GMT 2012 Rank 34 Aligned Residues 325 % Identity 17% Template c1y56B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:sarcosine oxidase; PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii Resolution 2.86 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.										.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																								.														.	.	.	.	.	.	.	.	.
Query SS confidence																																								.														.	.	.	.	.	.	.	.	.
Query Sequence		D	D	K	F	D	A	I	V	V	G	A	G	V	A	G	S	V	A	A	L	V	M	A	R	A	G	L	D	V	L	V	I	E	R	G	D	S	A	.	G	C	K	N	M	T	G	G	R	L	Y	A	H	.	.	.	.	.	.	.	.	.	T	L	E	A	I	I	P	G	F	A	V	S	A	P	V	E	R	K	V
Query Conservation																																								.														.	.	.	.	.	.	.	.	.
Alig confidence																																								.														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	E	K	S	E	I	V	V	I	G	G	G	I	V	G	V	T	I	A	H	E	L	A	K	R	G	E	E	V	T	V	I	E	K	R	F	I	G	S	G	S	T	F	R	C	G	T	G	I	R	Q	Q	F	N	D	E	A	N	V	R	V	M	K	R	S	V	E	L	W	K	K	Y	S	E	E	Y	G	F	S	F
Template Known Secondary structure			S	B		S							S													T	T								S	S	S	T	T		S														S	S																						T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.																																.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	R	E	K	I	S	F	L	T	E	E	S	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	D	F	H	R	E	Q	P	D	V	P	Q	H	A	S	Y	T	V	L	R	N	R	L	D	P	W	L	M	E	Q	A	E	Q	A
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	Q	T	G	Y	L	F	L	L	Y	D	D	E	E	V	K	T	F	K	R	N	I	E	I	Q	N	K	F	G	V	P	T	K	L	I	T	P	E	E	A	K	E	I	V	P	L	L	D	I	S	E	V	I	A	A	S	W	N	P	T	D	G	K	A	D	P	F	E	A	T	T	A	F	A	V	K	A	K	E	Y
Template Known Secondary structure												S																	T	T														S	S	T	T				T	T								T	T																				T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	Q	F	I	P	G	V	R	V	D	A	L	V	R	E	G	N	K	V	T	G	V	Q	A	G	D	D	I	L	E	A	N	V	V	I	L	A	D	G	V	N	S	M	L	G	R	S	L	G	M	V	P	A	S	D	P	H	H	Y	A	V	G	V	K	E	V	I	G	L	T	P	E	Q	I	N	D	R	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	K	L	L	E	Y	T	E	V	K	G	F	L	I	E	N	N	E	I	K	G	V	K	T	N	K	G	I	I	K	T	G	I	V	V	N	A	T	N	A	W	A	N	L	I	N	A	M	A	G	I	K	T	K	I	P	I	E	P	Y	K	H	Q	A	V	I	T	Q	P	I	K	R	G	T	I	N	P	M	V
Template Known Secondary structure		T						S									S	S	S	B							T	T						S							G	G	G									T			S																		S	T	T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	G	E	E	G	A	A	W	L	F	A	G	S	P	S	D	G	L	M	G	G	G	F	L	Y	T	N	K	D	S	I	S	L	G	L	V	C	G	L	G	D	I	A	H	A	Q	K	S	V	P	Q	M	L	E	D	F	K	Q	H	P	A	I	R	P	L	I	S	G	G	K	L	L	E	Y	S	A	H	M	V
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	F	K	Y	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	L	T	Q	T	F	H	G	G	I	I	G	G	I	G	Y	E	I	G	P	T	Y	D	L	T	P	T	Y	E	F	L	R	E	V	S	Y	Y	F	T	K	I	I	P	A	L	K	N	L	L	I	L	R	T	W	A	G	Y	Y
Template Known Secondary structure				S	T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S	S							S			B	S	S																							G	G	G	G	G	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.															250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.				.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		P	E	G	G	L	A	M	V	P	Q	L	V	N	E	G	V	M	I	V	G	D	A	A	.	.	.	G	F	C	L	N	L	G	F	T	V	R	G	M	D	L	A	I	A	S	A	Q	A	A	A	T	T	V	I	A	A	K	E	R	A	D	F	S	A	S	S	L	A	Q	Y	K	R
Query Conservation																									.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.
Template Sequence		A	K	.	.	.	.	.	.	.	.	.	T	P	D	S	N	P	A	I	G	R	I	E	E	L	N	D	Y	Y	I	A	A	G	F	S	G	H	G	F	M	M	A	P	A	V	G	E	M	V	A	E	L	I	T	K	G	K	T	K	L	P	V	E	W	Y	D	P	Y	R	F	E	R
Template Known Secondary structure				.	.	.	.	.	.	.	.	.		T	T	S								S	S	S	B	T								T	T																				S	S		S	S		G	G	G	G		G	G	G	T	T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.
Template SS confidence
		309	310										.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions