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Job DescriptionP77337
Confidence99.31%DateThu Jan 5 12:27:58 GMT 2012
Rank91Aligned Residues330
% Identity14%Templatec1f8sA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:l-amino acid oxidase; PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate.
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40...... ...50.........60......
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Query Sequence  SDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMT. . . . . . . . . . . . . . . GGRLYAHTLEAIIPGFAVSA
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Template Sequence  TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRL
Template Known Secondary structure 
SS



BTT

SSSSSBTT

TTTTSS


TT
TT

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   30.........40.........50.........60.........70.........80.........90.........100.........
 
   67..70.........80.........90.........100.........110.......
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Query Sequence  PVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  NEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYL
Template Known Secondary structure 

S

TTSTT
GGGG




TTTTT

TS
GGGSB
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   110.........120.........130.........140.........150.........160.........170.........180.........
 
   118.120.........130.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AEQAGAQFIPGVRVDALVREGN
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Template Conservation                                                   
   
   
   
         
  
     
Template Sequence  IKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQ
Template Known Secondary structure  TT


TT
GGGTTSBTT


TT
TTTGGGSS

SS
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   190.........200.........210.........220.........230.........240.........250.........260.........
 
   140...... ...150.........160.........170.........180.........190.........200.........210.....
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Query Sequence  KVTGVQA. . . . GDDILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGS
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Template Conservation     
              
 

 
 
      
     
                                         
Template Sequence  KVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTD
Template Known Secondary structure 

SSS


S
S
TTSS





SS
GGGGGT

SSS
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   270.........280.........290.........300.........310.........320.........330.........340.........
 
   216...220.........230.........240.........250.........260.........270.........280.........290.
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Query Sequence  PSDGLMGGGFLYTNKDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQ. . . .
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Template Conservation                     
                           
    
                 
       
 
Template Sequence  LPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGG
Template Known Secondary structure  STT


SS

TT

TTS
TT

GGG
TTT
SS
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   350.........360.........370.........380.........390.........400.........410.........420.........
 
   292.......300.........310.........320.........330.......
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Query Sequence  . . . . . . . . . . . . . . . . . LVNEGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKER
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Template Sequence  ITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQA. . . . . . HGWIDSTIKSGLRAARDVNLASEN
Template Known Secondary structure 


TT

BTT
SGGGSSS......SS

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   430.........440.........450.........460.. .......470.........480......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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