Job Description P30859 Confidence 99.94% Date Thu Jan 5 11:46:36 GMT 2012 Rank 33 Aligned Residues 213 % Identity 14% Template d2f34a1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.74

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.								.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.													80	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	I	R	F	A	T	E	A	S	Y	P	P	F	E	S	I	D	A	N	N	Q	I	.	.	.	.	.	.	.	V	G	F	D	V	D	L	A	Q	A	L	C	K	E	I	D	A	T	C	T	F	S	N	Q	A	F	D	S	L	I	P	S	L	K	F	R	.	.	.	.	.	.	.	.	.	.	.	.	R	V	E
Query Conservation																								.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.															.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		T	L	I	V	T	T	I	.	L	E	E	P	Y	V	M	Y	R	K	S	D	K	P	L	Y	G	N	D	R	F	E	G	Y	C	L	D	L	L	K	E	L	S	N	I	L	G	F	L	Y	D	V	K	L	V	P	D	G	K	Y	G	A	Q	N	D	K	G	E	W	N	G	M	V	K	E	L	I	D	H	R	A	D
Template Known Secondary structure									.		B	T	T	T	B				S			S				G	G	G	G			S														T									T	T						B		T	T	S		B									T	T	S		S
Template Predicted Secondary structure									.
Template SS confidence
		5	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.													.	.	.	.
Predicted Secondary structure																																							.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	M	A	G	M	D	I	T	P	E	R	E	K	Q	V	L	F	T	T	P	Y	Y	D	N	S	A	L	F	V	G	Q	Q	G	K	Y	T	.	.	S	V	D	Q	L	K	G	K	K	V	G	V	Q	N	G	T	T	H	Q	K	F	I	M	D	K	.	.	.	.	.	.	.	.	.	.	.	.	H	P	E	I
Query Conservation																																							.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	V	A	P	L	T	I	T	Y	V	R	E	K	V	I	D	F	S	K	P	F	M	T	L	G	I	S	I	L	Y	R	K	P	I	D	S	A	D	D	L	A	K	Q	T	K	I	E	Y	G	A	V	R	D	G	S	T	M	T	F	F	K	K	S	K	I	S	T	Y	E	K	M	W	A	F	M	S	S	R	Q
Template Known Secondary structure					S	S		B							T	T					S		S															S						T		S	S	S					B	T	T	S																								T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	V	P	Y	D	S	Y	Q	N	A	K	L	D	L	Q	N	G	R	I	D	G	V	F	G	D	T	A	V	V	T	E	W	L	K	D	N	P	K	L	A	A	V	G	D	K	V	T	D	K	D	Y	F	G	T	G	L	G	I	A	V	R	Q	G	N	T	E	L	Q	Q	K	L	N	T	A	L	E	K	V	K
Query Conservation
Alig confidence																																							.	.	.	.	.	.																								.
Template Conservation																																							.	.	.	.	.	.																								.
Template Sequence		Q	S	A	L	V	K	N	S	D	E	G	I	Q	R	V	L	T	T	D	Y	A	L	L	M	E	S	T	S	I	E	Y	V	T	Q	R	N	C	.	.	.	.	.	.	N	L	T	Q	I	G	G	L	I	D	S	K	G	Y	G	V	G	T	P	I	G	S	P	.	Y	R	D	K	I	T	I	A	I	L	Q	L	Q
Template Known Secondary structure					S	B	S	S											S	S																		T	.	.	.	.	.	.	T					S	S		S	S										T	T		T	.	T
Template Predicted Secondary structure																																							.	.	.	.	.	.																								.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.							.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	G	T	Y	E	T	I	Y	N	K	W	F	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	G	K	L	H	M	M	K	E	K	W	W	R
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions