Return to main results Retrieve Phyre Job Id

Job DescriptionP30859
Confidence97.21%DateThu Jan 5 11:46:36 GMT 2012
Rank56Aligned Residues185
% Identity8%Templated2czla1
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.55

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5960.........70.........80.........90.........100.........110.........120.........130........
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  DATCTFSNQAFDSLIPSLKFRRVEAVMAGMDITPEREKQVLFTTPYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQ
Query Conservation 
                   
  
                                                        
Alig confidence 















































































Template Conservation      
     
  
   
  
 


  

             
             
 
     

 

 

    
 
 
Template Sequence  PVPLEPVLEDVETLNRWALEGRLPLTKLSYAAYAQVRDRYVALRSGGALGRGVGPLVVARGPLQALEGLRVAVPGRHTTA
Template Known Secondary structure  SS


TT

STT
TTT
SSS
SS


SS

S

TT
S
TTS
Template Predicted Secondary structure 




























Template SS confidence 















































































   2930.........40.........50.........60.........70.........80.........90.........100........
 
   139140.........150.........160.........170.........180...... ...190.........200.........210...
Predicted Secondary structure 
















.





















....
Query SS confidence 















































.


























. . . .
Query Sequence  KFIMDKHPEITTVPYDSYQNAKLDLQNGRIDGVFGDTAVVTEWLKDNP. KLAAVGDKVTDKDYFGTGLGIAVRQGN. . . .
Query Conservation                          
  
  
                 .                        
  ....
Alig confidence 















































.


























....
Template Conservation    


 

     
         

  
  

 
 

  
          
 

   
   

 
 
      
      
Template Sequence  YFLLSLYAQGFVPVEVRYDRILPMVAQGEVEAGLIIHESRFTYPRYGLVQVVDLGAWWEERTGLPLPLGAILARRDLGEG
Template Known Secondary structure 
SS


GGGTTSSS
TTGGGGT
SS
GGG
Template Predicted Secondary structure 































Template SS confidence 















































































   109110.........120.........130.........140.........150.........160.........170.........180........
 
   214.....220.........230 .........240...
Predicted Secondary structure  ..
.



Query SS confidence  . .
















.












Query Sequence  . . TELQQKLNTALEKVKKD. GTYETIYNKWFQK
Query Conservation  ..  
   

  
  
   .
    
  

   
Alig confidence  ..
















.












Template Conservation      
   
  
         

          
Template Sequence  LIRALDEAVRRSVAYALAHPEEALDYMRAHAQE
Template Known Secondary structure  SGGGG
TT
Template Predicted Secondary structure 

Template SS confidence 
































   189190.........200.........210.........220.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions