Job Description P30859 Confidence 95.45% Date Thu Jan 5 11:46:36 GMT 2012 Rank 60 Aligned Residues 146 % Identity 16% Template d1us5a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.5

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																									.												.																												.
Query SS confidence																																									.												.																												.
Query Sequence		A	A	E	T	I	R	F	A	T	E	A	S	Y	P	P	F	E	S	I	D	A	N	N	Q	I	V	G	F	D	V	D	L	A	Q	A	L	C	K	E	.	I	D	A	T	C	T	F	S	N	Q	A	.	F	D	S	L	I	P	S	L	K	F	R	R	V	E	A	V	M	A	G	M	D	I	T	P	E	R	E	.
Query Conservation																																									.												.																												.
Alig confidence												.	.	.	.	.	.	.	.	.																					.												.																												.
Template Conservation												.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	E	F	I	T	I	G	S	G	.	.	.	.	.	.	.	.	.	S	T	T	G	V	Y	F	P	V	A	T	G	I	A	K	L	V	N	D	A	N	V	G	I	R	A	N	A	R	S	T	G	G	S	V	A	N	I	N	A	I	N	A	G	E	F	E	M	A	L	A	Q	N	D	I	A	Y	Y	A	Y	Q
Template Known Secondary structure												.	.	.	.	.	.	.	.	.		T	T	S	S																T	S	S									S											T	T	S		S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.										.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
															96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.									.	.	.	.	150	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	V	L	F	T	T	P	Y	Y	D	N	S	A	L	F	V	G	Q	Q	G	K	Y	T	S	V	D	Q	L	K	G	K	K	V	G	V	Q	N	G	T	T	H	Q	K	F	I	M	D	K	H	.	.	.	.	.	.	.	.	P	E	I	T	T	V	P	Y	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	C	C	I	P	A	F	E	G	K	P	V	K	T	I	R	A	L	A	A	L	Y	P	E	V	V	H	V	V	A	R	K	D	A	G	I	R	T	V	A	D	L	K	G	K	R	V	V	V	G	D	V	G	S	G	T	E	Q	N	A	R	Q	I	L	E	A	Y	G	L	T	F	D	D	L	G	Q	A	I	R	V
Template Known Secondary structure		T		S	S	T	T	T	T	T				T	T																		T	T	S	S		S	S	G	G	G	G	T	T	S							T	T														T	T			G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	Q	N	A	K	L	D	L	Q	N	G	R	I	D	G	V	F	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	S	Q	G	I	Q	L	M	Q	D	K	R	A	D	A	L	F	Y
Template Known Secondary structure												T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions