Job Description P30859 Confidence 22.05% Date Thu Jan 5 11:46:36 GMT 2012 Rank 119 Aligned Residues 193 % Identity 8% Template d1sw5a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.80

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.															.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	D	V	D	L	A	Q	A	L	C	K	E	I	D	A	T	C	T	F	S	N	Q	.	.	A	F	D	S	L	I	P	S	L	K	F	R	R	V	E	A	V	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	M	D	I	T	P	E	R	E	K	Q	V	L	F	T	T	P	Y	Y	D	N	S	A
Query Conservation																								.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	A	N	M	I	A	I	L	L	E	E	N	G	Y	K	A	E	V	K	E	G	L	G	G	T	L	V	N	Y	E	A	L	K	R	N	D	I	Q	L	Y	V	E	Y	T	G	T	A	Y	N	V	I	L	R	K	Q	P	P	E	L	W	D	Q	Q	Y	I	F	D	E	V	K	K	G	L	L	E	A	D	G	V
Template Known Secondary structure														T	T							T	T			S											T	S	S	S												T	T	S						S	S
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		110	.	.	.	.	.	.																		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.										.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Query Sequence		L	F	V	G	Q	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	T	S	V	D	Q	L	K	G	K	K	V	G	V	Q	N	G	T	T	H	Q	.	.	.	.	.	.	.	.	.	K	F	I	M	D	K	H	P	E	I	T	T	V	P	Y	D	S	Y	Q	N	A	K	L	D	L
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	A	A	K	L	G	F	R	D	D	Y	A	L	A	V	R	A	D	W	A	E	E	N	G	V	E	K	I	S	D	L	A	E	F	A	D	Q	L	V	F	G	S	D	P	E	F	A	S	R	P	D	G	L	P	Q	I	K	K	V	Y	G	F	E	F	K	E	V	K	Q	M	E	P	T	L	M	Y	E	A	I
Template Known Secondary structure																										T			B	G	G	G	G	T	T	T	G	G	G												S	T	T	S									T				S							G	G	G
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.													.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	N	G	R	I	D	G	V	F	G	D	T	A	V	V	T	E	W	L	K	D	N	P	K	L	A	A	V	G	D	K	V	T	D	K	D	Y	F	G	T	G	L	G	I	A	V	R	Q	G	.	.	.	N	T	E	L	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	K	L	N	T	A	L	E	K	V	K
Query Conservation																																																			.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.																													.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.
Template Sequence		K	N	K	Q	V	D	V	I	P	A	Y	T	T	D	S	R	.	.	.	.	.	V	D	L	F	N	L	K	I	L	E	D	D	K	G	A	L	P	P	Y	D	A	I	I	I	V	N	G	N	T	A	K	D	E	K	L	I	S	V	L	K	L	L	E	D	R	I	D	T	D	T	M	R	A	L	N	Y	Q	Y	D
Template Known Secondary structure			T	T	S		S						T	T				.	.	.	.	.				T	T					B		T	T			S											T	T	G	G	G										T	T	T	T
Template Predicted Secondary structure																		.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.						.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		229	230	.		.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		K	D	G	.	T	Y	E	T	I	Y	N	K	W	F	Q	K
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		V	E	K	K	D	A	R	E	I	A	M	S	F	L	K	E
Template Known Secondary structure		T	S
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions