Job Description P30859 Confidence 38.19% Date Thu Jan 5 11:46:36 GMT 2012 Rank 105 Aligned Residues 175 % Identity 14% Template d1nh8a1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.80

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		43		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.																	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure			.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Query SS confidence			.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Query Sequence		I	.	V	G	F	D	V	D	L	A	Q	A	L	C	K	E	I	D	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	T	F	S	N	Q	A	F	D	S	L	I	P	S	L	K	F	R	R	V	E	A	V	M	A	G	M	D	I	T	P	E	R	E	K	Q	V	L	F	T	T	P	Y	.
Query Conservation			.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Alig confidence			.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation
Template Sequence		P	N	K	G	A	L	S	E	P	A	T	E	I	L	A	E	A	G	Y	R	R	R	T	D	S	K	D	L	T	V	I	D	P	V	N	N	V	E	F	F	F	L	R	P	K	D	I	A	I	Y	V	G	S	G	E	L	D	F	G	I	T	G	R	D	L	V	C	D	S	G	A	Q	V	R	E	R	L	A	L	G
Template Known Secondary structure			S	S	S	T	T											T	T						S	T	T		S					T	T	T	T								G	G	G								S	S		S													T										S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
			105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	Y	D	N	S	A	L	F	V	G	Q	Q	G	K	Y	T	S	V	D	Q	L	K	G	K	K	V	G	V	Q	N	G	T	T	H	Q	K	F	I	M	D	K	H	P	E	I	T	T	V	P	Y	D	S	Y	Q	N	A	K	L	D	L	Q	N	G	R	I	D	G	V	F	G	D	T	A	V	V	T	E	W	L	K
Query Conservation		.
Alig confidence		.																																																								.	.
Template Conservation																																																										.	.
Template Sequence		F	G	S	S	S	F	R	Y	A	A	P	A	G	R	N	W	T	T	A	D	L	A	G	M	R	I	A	T	A	Y	P	N	L	V	R	K	D	L	A	T	K	G	I	E	A	T	V	I	R	L	D	G	A	V	E	I	.	.	S	V	Q	L	G	V	A	D	A	I	A	D	V	V	G	S	G	R	T	L	S	Q
Template Known Secondary structure													T	T	S				G	G	G	G	T	T						S													T									S	S			T		.	.				T	T	S		S							S	S	S
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		D	N	P	K	L	A	A	V	G	D	K	V	T	D	K	D	Y	F	G	T	G	L	G	I	A	V	R	Q	G	.	N	T	E	L	Q	Q	K	L	N	T	A	L	E	K
Query Conservation																															.
Alig confidence			.	.	.	.	.	.	.																						.
Template Conservation			.	.	.	.	.	.	.
Template Sequence		H	.	.	.	.	.	.	.	D	L	V	A	F	G	E	P	L	C	D	S	E	A	V	L	I	E	R	A	E	A	R	D	Q	L	V	A	R	V	Q	G	V	V	F	G
Template Known Secondary structure		T	.	.	.	.	.	.	.	T
Template Predicted Secondary structure			.	.	.	.	.	.	.
Template SS confidence
		165								.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions