Job Description P30859 Confidence 91.66% Date Thu Jan 5 11:46:36 GMT 2012 Rank 70 Aligned Residues 173 % Identity 18% Template c3gyyC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:periplasmic substrate binding protein; PDBTitle: the ectoine binding protein of the teaabc trap transporter teaa in the2 apo-state Resolution 2.20 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																				.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	A	Q	A	L	C	K	E	I	D	A	T	C	T	F	S	N	.	.	Q	A	F	D	S	L	I	P	S	L	K	F	R	R	V	E	A	V	M	A	G	M	D	I	T	P	E	R	E	K	Q	V	L	F	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	F	K	G	Y	V	E	D	N	S	D	H	T	V	Q	V	Y	R	F	G	E	L	S	D	D	I	M	E	Q	T	Q	N	G	I	L	Q	F	V	N	Q	S	P	G	F	T	G	S	L	I	P	S	A	Q	I	F	F	I	P	Y	L	M	P	T	D	M	D	T	V	L	E	F	F	D	E	S	K	A	I	N	E
Template Known Secondary structure											S	S								T	T				T	T							T	T	S		S						G	G	G		T	T	T	S	G	G	G	G	G	G	G	S	T	T	S	S		S	S																T
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
															102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	Y	Y	D	N	S	A	L	F	V	G	Q	Q	G	K	Y	T	S	V	D	Q	L	K	G	K	K	V	G	V	Q	N	G	T	T	H	Q	K	F	I	M	D	K	H	P	E	I	T	T	V	P	Y	D	S	Y	Q	N	A	K	L	D	L	Q	N	G	R	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.
Template Conservation																																																													.	.	.
Template Sequence		M	F	P	K	L	Y	A	E	H	G	L	E	L	L	K	M	Y	P	E	G	E	M	V	V	T	A	D	E	P	I	T	S	P	E	D	F	D	N	K	K	I	R	T	M	T	N	P	L	L	A	E	T	Y	K	A	F	G	A	T	.	.	.	P	T	P	L	P	W	G	E	V	Y	G	G	L	Q	T	G	I	I
Template Known Secondary structure									T	T	T																	S	S				S	G	G	G	S	T	T							S											T	T			.	.	.																T	S
Template Predicted Secondary structure																																																													.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.						.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence		D	G	V	F	G	D	T	A	V	V	T	E	W	L	K	D	N	P	K	L	A	A	V	G	D	K	V	T	D	K	D	Y	F	G	T	G	L	G	I	A	V	R	Q	G	.	.	.	.	.	N	T	E	L	Q	Q	K	L	N	T	A	L	E	K	V	K	K
Query Conservation																																														.	.	.	.	.
Alig confidence													.	.	.	.	.																													.	.	.	.	.
Template Conservation													.	.	.	.	.
Template Sequence		D	G	Q	E	N	P	I	F	W	I	E	.	.	.	.	.	S	G	G	L	Y	E	V	S	P	N	L	T	F	T	S	H	G	W	F	T	T	A	M	M	A	N	Q	D	F	Y	E	G	L	S	E	E	D	Q	Q	L	V	Q	D	A	A	D	A	A	Y	D
Template Known Secondary structure		S											.	.	.	.	.		T	T	G	G	G	S																										S
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190						.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions