Job Description P30859 Confidence 99.93% Date Thu Jan 5 11:46:36 GMT 2012 Rank 34 Aligned Residues 216 % Identity 19% Template c2v3tA_ PDB info PDB header:receptor Chain: A: PDB Molecule:glutamate receptor delta-2 subunit synonym PDBTitle: structure of the ligand-binding core of the ionotropic2 glutamate receptor-like glurdelta2 in the apo form Resolution 2.75 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.						.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.									.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																																			.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.																																			.	.	.	.	.	.	.	.
Query Sequence		E	T	I	R	F	A	T	E	A	S	Y	P	P	F	.	.	.	.	.	E	S	I	D	A	N	N	Q	I	V	G	F	D	V	D	L	A	Q	A	L	C	K	E	I	D	A	T	C	T	F	S	N	Q	A	.	.	.	.	.	.	.	.	F	D	S	L	I	P	S	L	K	F	R	R	V	E	A	V	M	A	G
Query Conservation																.	.	.	.	.																																			.	.	.	.	.	.	.	.
Alig confidence										.						.	.	.	.	.																																			.	.	.	.	.	.	.	.
Template Conservation										.
Template Sequence		V	V	L	R	V	V	T	V	.	L	E	E	P	F	V	X	V	S	E	N	V	L	G	K	P	K	K	Y	Q	G	F	S	I	D	V	L	D	A	L	S	N	Y	L	G	F	N	Y	E	I	Y	V	A	P	D	H	K	Y	G	S	P	T	W	N	G	L	V	G	E	L	V	F	K	R	A	D	I	G	I	S	A
Template Known Secondary structure										.		B	T	T	T	B							T	T	S						S														T									T	T																	T	T	S		S
Template Predicted Secondary structure										.
Template SS confidence
		3	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.									.	.	.	.
Predicted Secondary structure																																	.	.																																				.	.	.	.	.	.	.	.
Query SS confidence																																	.	.																																				.	.	.	.	.	.	.	.
Query Sequence		M	D	I	T	P	E	R	E	K	Q	V	L	F	T	T	P	Y	Y	D	N	S	A	L	F	V	G	Q	Q	G	K	Y	.	.	T	S	V	D	Q	L	K	G	K	K	V	G	V	Q	N	G	T	T	H	Q	K	F	I	M	D	K	H	P	E	I	T	T	V	P	Y	.	.	.	.	.	.	.	.	D	S	Y	Q
Query Conservation																																	.	.																																				.	.	.	.	.	.	.	.
Alig confidence																																	.	.																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	I	T	P	D	R	E	N	V	V	D	F	T	T	R	Y	X	D	Y	S	V	G	V	L	L	R	R	S	I	Q	S	L	Q	D	L	S	K	Q	T	D	I	P	Y	G	T	V	L	D	S	A	V	Y	Q	H	V	R	X	K	G	L	N	P	S	X	Y	S	Q	X	W	R	X	I	N	N	N	V	L	E	S
Template Known Secondary structure												S						S															S					T	T			S	S					B	T	T	S											T																	B
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	K	L	D	L	Q	N	G	R	I	D	G	V	F	G	D	T	A	V	V	T	E	W	L	K	D	N	P	K	L	A	A	V	G	D	K	V	T	D	K	D	Y	F	G	T	G	L	G	I	A	V	R	Q	G	N	T	E	L	Q	Q	K	L	N	T	A	L	E	K	V	K	K	D	G	T	Y	E	T	I	Y
Query Conservation
Alig confidence																																			.	.	.	.	.																				.
Template Conservation																																			.	.	.	.	.																				.
Template Sequence		Q	A	G	I	Q	K	V	K	Y	G	N	Y	A	F	V	W	D	A	A	V	L	E	Y	V	A	I	N	D	P	D	C	S	F	.	.	.	.	.	Y	T	V	T	V	A	D	R	G	Y	G	I	A	L	Q	H	G	S	P	.	Y	R	D	V	F	S	Q	R	I	L	E	L	Q	Q	S	G	D	X	D	I	L	K
Template Known Secondary structure											S	S																T		T	T				.	.	.	.	.							S									T	T		S	.	S															T
Template Predicted Secondary structure																																			.	.	.	.	.																				.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210						.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		238	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	W	F	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	K	W	W	P	K
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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