Job Description P30859 Confidence 99.97% Date Thu Jan 5 11:46:36 GMT 2012 Rank 25 Aligned Residues 215 % Identity 19% Template c2v25B_ PDB info PDB header:receptor Chain: B: PDB Molecule:major cell-binding factor; PDBTitle: structure of the campylobacter jejuni antigen peb1a, an2 aspartate and glutamate receptor with bound aspartate Resolution 1.49 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.				.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																								.																				.	.	.
Query SS confidence																								.																				.	.	.
Query Sequence		T	A	A	E	T	I	R	F	A	T	E	A	S	Y	P	P	F	E	S	I	D	A	.	N	N	Q	I	V	G	F	D	V	D	L	A	Q	A	L	C	K	E	I	.	.	.	D	A	T	C	T	F	S	N	Q	A	F	D	S	L	I	P	S	L	K	F	R	R	V	E	A	V	M	A	G	M	D	I	T	P	E
Query Conservation																								.																				.	.	.
Alig confidence																								.																				.	.	.
Template Conservation
Template Sequence		K	S	K	G	Q	L	I	V	G	V	K	N	D	V	P	H	Y	A	L	L	D	Q	A	T	G	E	I	K	G	F	E	V	D	V	A	K	L	L	A	K	S	I	L	G	D	D	K	K	I	K	L	V	A	V	N	A	K	T	R	G	P	L	L	D	N	G	S	V	D	A	V	I	A	T	F	T	I	T	P	E
Template Known Secondary structure					T								S			T	T	T					T	T	T	T				S															S		T	T	S								T	T	T							T	T	S		S				S	S		B
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.						.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		R	E	K	Q	V	L	F	T	T	P	Y	Y	D	N	S	A	L	F	V	G	Q	Q	G	K	Y	T	S	V	D	Q	L	K	G	K	K	V	G	V	Q	N	.	.	.	.	.	G	T	T	H	Q	K	F	I	M	D	K	H	P	E	I	T	T	V	P	Y	D	S	Y	Q	N	A	K	L	D	L	Q	N	G	R	I
Query Conservation																																										.	.	.	.	.
Alig confidence																																										.	.	.	.	.
Template Conservation
Template Sequence		R	K	R	I	Y	N	F	S	E	P	Y	Y	Q	D	A	I	G	L	L	V	L	K	E	K	K	Y	K	S	L	A	D	M	K	G	A	N	I	G	V	A	Q	A	A	T	T	K	K	A	I	G	E	A	A	K	K	I	G	I	D	V	K	F	S	E	F	P	D	Y	P	S	I	K	A	A	L	D	A	K	R	V
Template Known Secondary structure				T	T					S		S											G	G	G				S	G	G	G	G	T	T							T	T		S													T									S	S										T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	V	F	G	D	T	A	V	V	T	E	W	L	K	D	N	P	K	L	A	A	V	G	D	K	V	T	D	K	D	Y	F	G	T	G	L	G	I	A	V	R	Q	G	N	T	E	L	Q	Q	K	L	N	T	A	L	E	K	V	K	K	D	G	T	Y	E	T	I	Y	N	K	W	F
Query Conservation
Alig confidence																				.	.	.	.	.	.	.																																			.	.
Template Conservation																				.	.	.	.	.	.	.																																			.	.
Template Sequence		D	A	F	S	V	D	K	S	I	L	L	G	Y	V	D	D	K	S	.	.	.	.	.	.	.	E	I	L	P	D	S	F	E	P	Q	S	Y	G	I	V	T	K	K	D	D	P	A	F	A	K	Y	V	D	D	F	V	K	E	H	.	.	K	N	E	I	D	A	L	A	K	K	W	G
Template Known Secondary structure		S										T	T	T			T	T		.	.	.	.	.	.	.				S				S										T	T															T	.	.											T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.																																			.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.								.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions