Job Description P30859 Confidence 94.28% Date Thu Jan 5 11:46:36 GMT 2012 Rank 63 Aligned Residues 197 % Identity 17% Template c2rejA_ PDB info PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation Resolution 2.60 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		F	D	V	D	L	A	Q	A	L	C	K	E	I	D	A	T	C	T	F	S	N	Q	A	F	D	S	L	I	P	S	L	K	F	R	R	V	E	A	V	M	A	G	M	D	I	T	P	E	R	E	K	Q	V	L	F	T	T	P	Y	Y	D	N	S	A	L	F	V	G	Q	Q	G	K	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																																																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	T	A	T	A	T	T	I	L	E	A	L	G	Y	E	T	D	V	K	V	L	S	V	P	V	T	Y	T	S	L	K	N	K	D	I	D	V	F	L	G	N	W	M	P	T	M	E	A	D	I	A	P	Y	R	E	D	K	S	V	E	T	V	R	E	N	L	A	G	A	K	Y	T	L	A	T	N	A	K	G
Template Known Secondary structure														T	T														T	S	S	T	T	T	T											S	T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
						118	.	120	.	.	.	.								.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.											.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.								.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.								.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	Y	T	S	V	D	Q	L	.	.	.	.	.	.	.	K	G	K	K	V	G	V	Q	N	G	T	T	H	Q	K	F	I	M	D	K	H	P	E	I	T	T	V	P	Y	D	S	Y	.	.	.	.	.	.	.	.	.	.	Q	N	A	K	L	D	L	Q	N	G	R	I	D	G	V	F	G	D	T	A
Query Conservation		.	.	.	.								.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.								.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	L	G	I	K	D	F	K	D	I	A	A	H	K	D	E	L	D	G	K	I	Y	G	I	E	P	G	N	D	G	N	R	L	I	I	D	M	V	E	K	G	T	F	D	L	K	G	F	E	V	V	E	S	S	E	Q	G	M	L	A	Q	V	A	R	A	E	K	S	G	D	P	I	V	F	L	G	W	E	P
Template Known Secondary structure					T			B	T	T	S	S	G	G	G		T	T	T		S							S	S											T	T	T	T		T	T		T	T																			T	T	T	T										S
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.	.	.	.	.	.	220											.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																						.	.	.	.									.	.	.	.	.	.	.	.	.	.												.
Query SS confidence																																						.	.	.	.									.	.	.	.	.	.	.	.	.	.												.
Query Sequence		V	V	T	E	W	L	K	D	N	P	K	L	A	A	V	G	D	K	V	T	D	K	D	Y	F	G	T	G	L	G	I	A	V	R	Q	G	.	.	.	.	N	T	E	L	Q	Q	K	L	.	.	.	.	.	.	.	.	.	.	N	T	A	L	E	K	V	K	K	D	G	.	T	Y	E	T	I	Y	N	K	W	F
Query Conservation																																						.	.	.	.									.	.	.	.	.	.	.	.	.	.												.
Alig confidence							.																															.	.	.	.									.	.	.	.	.	.	.	.	.	.												.
Template Conservation							.
Template Sequence		H	P	M	N	A	.	N	F	K	L	T	Y	L	S	G	G	D	D	V	F	G	P	N	Y	G	G	A	T	V	H	T	N	V	R	A	G	Y	T	T	E	C	P	N	V	D	K	L	L	Q	N	L	S	F	S	L	Q	M	E	N	E	I	M	G	K	I	L	N	D	G	E	D	P	E	K	A	A	A	A	W	L
Template Known Secondary structure		S	G	G	G	G	.	T	S						B	S			S	S	S		S	T	T	T										T	T					S								T	T													T	T	T	S	S	S				T	T					T	T	S
Template Predicted Secondary structure							.
Template SS confidence
		208	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		242	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	D
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		287	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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