Job Description P30859 Confidence 90.70% Date Thu Jan 5 11:46:36 GMT 2012 Rank 73 Aligned Residues 172 % Identity 11% Template c2pfyA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp7, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid Resolution 1.95 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.							.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	A	Q	A	L	C	K	E	I	D	A	T	C	T	F	S	N	Q	A	.	.	.	.	.	.	F	D	S	L	I	P	S	L	K	F	R	R	V	E	A	V	M	A	G	M	D	I	T	P	E	R	E	K	Q	V	L	F	T	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	F	A	D	E	V	K	A	A	T	A	G	A	L	E	I	K	V	Q	S	N	S	T	L	L	K	R	P	E	V	K	R	G	V	Q	Q	G	V	V	Q	I	G	E	V	L	V	S	A	L	G	N	E	D	P	L	F	E	I	D	S	V	P	F	L	A	S	S	F	N	E	S	E	K	L	W	K	A	T	R	P
Template Known Secondary structure											T	T	T	S								T	T	S	S	S		G	G	G								T	S	S	S						G	G	G	G	T	T	T		G	G	G	G	G	G	G	S	T	T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
																	104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Y	D	N	S	A	L	F	V	G	Q	Q	G	K	Y	T	S	V	D	Q	L	K	G	K	K	V	G	V	Q	N	G	T	T	H	Q	K	F	I	M	D	K	H	P	E	I	T	T	V	P	Y	D	S	Y	Q	N	A	K	L	D	L	Q	N	G	R	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.											.	.	.
Template Conservation																																																		.											.	.	.
Template Sequence		L	L	A	Q	R	L	D	K	Q	G	I	V	L	V	Y	G	S	P	W	P	P	Q	G	I	Y	T	K	K	P	V	A	A	L	A	D	L	K	G	T	R	F	R	A	Y	S	A	S	T	.	S	H	X	A	A	L	X	G	A	V	.	.	.	P	T	T	V	Q	T	P	E	V	P	Q	A	F	S	T	G	V	I
Template Known Secondary structure									T	T	T																	S	S			S	S	G	G	G	G	T	T							S				.							T	T	S		.	.	.						G	G	G							T	T	S
Template Predicted Secondary structure																																																		.											.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.						.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence		D	G	V	F	G	D	T	A	V	V	T	E	W	L	K	D	N	P	K	L	A	A	V	G	D	K	V	T	D	K	D	Y	F	G	T	G	L	G	I	A	V	R	Q	G	.	.	.	.	.	N	T	E	L	Q	Q	K	L	N	T	A	L	E	K	V	K	K
Query Conservation																																														.	.	.	.	.
Alig confidence													.	.	.	.	.																													.	.	.	.	.
Template Conservation													.	.	.	.	.
Template Sequence		D	A	X	L	T	S	P	A	T	G	V	.	.	.	.	.	D	S	Q	A	W	D	Y	V	K	Y	Y	Y	D	A	Q	A	F	I	P	Q	S	F	V	I	A	N	K	R	A	F	Q	R	L	P	A	E	V	R	Q	A	V	L	D	A	G	A	K	A	E	I
Template Known Secondary structure		S	B										.	.	.	.	.		T	T	G	G	G	T																										S
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.						.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions