Job Description P30859 Confidence 91.47% Date Thu Jan 5 11:46:36 GMT 2012 Rank 71 Aligned Residues 182 % Identity 13% Template c2hpgB_ PDB info PDB header:ligand binding protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding PDBTitle: the crystal structure of a thermophilic trap periplasmic2 binding protein Resolution 1.90 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.							.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	A	Q	A	L	C	K	E	I	D	A	T	C	T	F	S	N	Q	A	F	D	S	L	.	.	.	.	.	.	I	P	S	L	K	F	R	R	V	E	A	V	M	A	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	W	A	K	A	V	E	E	K	T	N	G	D	V	R	I	E	V	F	P	S	S	Q	L	G	V	E	E	D	I	I	E	Q	I	R	X	G	A	P	V	G	W	N	T	D	S	A	R	L	G	X	Y	V	K	D	I	G	V	X	N	L	A	Y	F	I	D	F	X	G	A	K	T	P	E	E	A	I	E	V	L
Template Known Secondary structure											T	T	T	S											T	T	T										T	T		S											T	T	T	S	G	G	G	G	G	G	G	S	T	T					T	T			S
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
														89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	D	I	T	P	E	R	E	K	Q	V	L	F	T	T	P	Y	Y	D	N	S	A	L	F	V	G	Q	Q	G	K	Y	T	S	V	D	Q	L	K	G	K	K	V	G	V	Q	N	G	T	T	H	Q	K	F	I	M	D	K	H	P	E	I	T	T	V	P	Y	D	S	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		K	K	I	K	Q	S	P	T	X	Q	K	W	L	K	E	L	E	Q	R	F	G	I	K	V	L	S	F	Y	W	V	Q	G	Y	R	H	F	V	T	N	K	P	I	R	K	P	E	D	L	N	G	L	R	I	R	T	P	G	A	P	A	W	Q	E	S	I	R	S	L	G	A	I	.	.	.	P	V	A	V	N	F
Template Known Secondary structure							S																																	S	S				S	G	G	G	G	T	T							S	S											T			.	.	.						G
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.						.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																																										.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.
Query Sequence		Q	N	A	K	L	D	L	Q	N	G	R	I	D	G	V	F	G	D	T	A	V	V	T	E	W	L	K	D	N	P	K	L	A	A	V	G	D	K	V	T	D	K	D	Y	F	G	T	G	L	G	I	A	V	R	Q	G	.	.	.	.	.	N	T	E	L	Q	Q	K	L	N	T	A	L	E	K	V	K	K	D	G
Query Conservation																																																										.	.	.	.	.
Alig confidence																											.	.	.	.	.																											.	.	.	.	.																			.
Template Conservation																											.	.	.	.	.																																																		.
Template Sequence		G	E	I	Y	T	A	V	Q	T	R	A	V	D	G	A	E	L	T	Y	A	N	V	Y	N	G	.	.	.	.	.	G	L	Y	E	V	L	K	Y	X	S	E	T	G	H	F	L	L	I	N	F	E	I	V	S	A	D	W	F	N	S	L	P	K	E	Y	Q	K	I	I	E	E	E	X	D	K	A	G	I	E	.
Template Known Secondary structure		G	G							T	T	S		S												T	.	.	.	.	.	T	G	G	G	T																										S																			.
Template Predicted Secondary structure																											.	.	.	.	.																																																		.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.						.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		232	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	E	T	I	Y	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	L	K	I	X	K	E
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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