Job Description P30859 Confidence 32.68% Date Thu Jan 5 11:46:36 GMT 2012 Rank 108 Aligned Residues 192 % Identity 11% Template c2f7cA_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: catm effector binding domain with its effector cis,cis-muconate Resolution 2.16 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		A	E	T	I	R	F	A	T	E	A	S	Y	P	P	F	E	S	I	D	A	N	N	Q	I	V	G	F	D	V	D	L	A	Q	A	L	C	K	E	.	I	D	A	T	C	T	F	S	N	Q	A	F	D	S	L	I	P	S	L	K	F	R	R	V	E	A	V	M	A	G	M	D	I	T	P	E	R	E	K	Q	V
Query Conservation																																								.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Q	T	L	R	I	G	Y	V	S	S	L	L	.	.	.	.	.	.	.	.	.	.	.	Y	G	L	L	P	E	I	I	Y	L	F	R	Q	Q	N	P	E	I	H	I	E	L	I	E	C	G	T	K	D	Q	I	N	A	L	K	Q	G	K	I	D	L	G	F	G	R	L	K	I	T	D	P	A	I	R	R	I
Template Known Secondary structure											G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	G	T	T													T	T	S																		T	T	S		S					S	S				B	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.												.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.									.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.																								.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.																								.	.	.	.	.	.	.	.
Query Sequence		L	F	T	T	P	Y	Y	D	N	S	A	L	F	.	.	.	.	V	G	Q	Q	G	K	Y	T	S	V	D	Q	L	K	G	K	K	V	G	V	Q	N	G	.	.	.	.	.	.	.	.	T	T	H	Q	K	F	I	M	D	K	H	P	E	I	T	T	V	P	Y	D	S	Y	Q	N	A	K	L	D	L	Q	N	G
Query Conservation															.	.	.	.																								.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	H	K	E	Q	L	K	L	A	I	H	K	H	H	H	P	N	Q	F	A	A	T	G	V	H	L	S	Q	I	I	D	E	P	M	L	L	Y	P	V	S	Q	K	P	N	F	A	T	F	I	Q	S	L	F	T	E	L	G	L	V	P	S	K	L	T	E	I	R	E	I	Q	L	A	L	G	L	V	A	A	G
Template Known Secondary structure														T	T	S		T	T	T	S		T	T		B		G	G	G	G	T	T	S								S	S	S	S	S											T	T	T				S						S	S											T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		R	I	D	G	V	F	G	D	T	A	V	V	T	E	W	L	K	D	N	P	K	L	A	A	V	G	D	K	V	T	D	K	D	Y	F	G	T	G	L	G	I	A	V	R	Q	G	.	N	T	E	L	Q	Q	K	L	N	T	A	L	E	K	V	K	K
Query Conservation																																																.
Alig confidence										.	.	.	.	.	.	.																																.
Template Conservation										.	.	.	.	.	.	.
Template Sequence		E	G	V	C	I	V	P	A	.	.	.	.	.	.	.	S	A	M	D	I	G	V	K	N	L	L	Y	I	P	I	L	D	D	D	A	Y	S	P	I	S	L	A	V	R	N	M	D	H	S	N	Y	I	P	K	I	L	A	C	V	Q	E	V	F	A
Template Known Secondary structure		S							G	.	.	.	.	.	.	.	G	G	G	G	S	S		S	S						B		S	T	T											T	T				T
Template Predicted Secondary structure										.	.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.								.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions