|   |
2 | . | . | . | . | . | . | . | 10 | |
. | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | I | K | V | G | I | N | G | F | . |
G | R | I | G | R | I | V | F | R | A | A | Q | K | R | S | D | I | E | I | V | A | I | N | D | L | L | D | A | D | Y | M | A | Y | M | L | K | Y | D | S | T | H | G | R | F | D | G | T | V | E | V | K | D | G | H | L | I | V | N | G | K | K | I | R | V | T | A | E | R | D | P |
Query Conservation |   |
  |
|
|
|
|
|
|
|   | . |
|   |
|
|
|   |   |   |
|   |
|   |   |   |   |   |   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|   |
|   |   |
|   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|
|
|
|
|
|
|   |
|
|   |
|
|
|   |   |
|
|   |   |
|   |
|
|
|   |   |
| . | . | . | . | . | . | . | . | . | . |   |   |   |
|
|   |
|
|
|
|
|   |   |   | . | . | . | . | . | . | . | . | . | . |
|   |   |   |   |   |   |
|   |   |   |   |
|   |
Template Sequence |   |
M | Q | N | V | G | F | I | G | W | R | G | M | V | G | S | V | L | M | Q | R | M | V | E | E | R | D | F | D | A | I | R | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | F | F | S | T | S | Q | L | G | Q | A | A | P | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
F | G | G | T | T | G | T | L | Q | D | A | F | D | L |
Template Known Secondary structure |   |
|
|  |  |  |  |  | S | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T | G | G | G | G | S |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  | S | S | S | T | T | S | B |
|
| G | . | . | . | . | . | . | . | . | . | . | G | G | T |
|
|
| B |
|  |  | T | T |
|  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |
|
|
|
|
|
|
|  |  |  | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 40 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | |
|
. | . | . | . | 120 | . | . | . | . | . | . | . | |
|
. | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | |
|
|
. | . | . | . | . | . | . | . | 150 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
| . | . |  |  |  |  |
|
|
|
|
|
|
|
| . | . |
|  |  |  |  |
|
|
|  |  |  |  |
|
| . | . | . |
|
|  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | N | L | K | W | D | E | V | G | V | D | V | V | A | E | A | T | G | L | F | L | T | D | E | T | A | R | K | H | I | T | A | G | A | K | . |
. |
K | V | V | M | T | G | P | S | K | D | N | T | . |
. |
P | M | F | V | K | G | A | N | F | D | K | Y | A | G | . |
. |
. |
Q | D | I | V | S | N | A | S | C | T | T | N |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |
|
|
|
|
|   |
|
|
|   |   |   |   |   |
|   |
|   |   |   |
|   |   |
|
|
| . | . |   |
|   |   |
|
|
|   |   |   |   |   | . | . |
|   |   |
|   |
|
|
|   |   |   |   |   |   | . | . | . |   |   |
|
|
|
|   |
|
|
|
|
|
Alig confidence |   |
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   | . | . | . | . |   |   |
|
|   |
|   |
|   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |
|
|   |   |   |   |
|
|
|
|
|
|
|
|
|   |   |   |
|
|
|
|
|
|
|
|
|
|   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |
|   |
Template Sequence |   |
E | A | L | K | . |
. |
. |
. |
A | L | D | I | I | V | T | C | Q | G | G | D | Y | T | N | E | I | Y | P | K | L | R | E | S | G | W | Q | G | Y | W | I | D | A | A | S | S | L | R | M | K | D | D | A | I | I | I | L | D | P | V | N | Q | D | V | I | T | D | G | L | N | N | G | I | R | T | F | V | G | G | A | A | E |
Template Known Secondary structure |   |
 |  |  |  | . | . | . | . | T |
| S |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |  |
| S | S | T | T | T | T |
| T | T |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |
|
|
|  |
Template Predicted Secondary structure |   |
 |  |  |
| . | . | . | . |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
61 | . | . | . | |
|
|
|
. | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . |
  |
  |   |
154 | . | . | . | . | . | 160 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
C | L | A | P | L | A | K | V | I |
Query Conservation |   |
  |
|
|
|   |
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |
|   |   |   |
Template Sequence |   |
P | L | R | R | M | L | R | Q | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
  |   |
358 | . | 360 | . | . | . | . | . | . |
  |