Job Description P0A9B2 Confidence 100.00% Date Thu Jan 5 11:09:48 GMT 2012 Rank 64 Aligned Residues 307 % Identity 21% Template c1ys4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:aspartate-semialdehyde dehydrogenase; PDBTitle: structure of aspartate-semialdehyde dehydrogenase from2 methanococcus jannaschii Resolution 2.29 Å

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		1	.	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure												.																																																.
Query SS confidence												.																																																.
Query Sequence		M	T	I	K	V	G	I	N	G	F	.	G	R	I	G	R	I	V	F	R	A	A	Q	K	R	S	D	I	E	I	V	A	I	N	D	L	L	D	A	D	Y	M	A	Y	M	L	K	Y	D	S	T	H	G	R	F	D	G	T	.	V	E	V	K	D	G	H	L	I	V	N	G	K	K	I	R	V	T	A	E	R
Query Conservation												.																																																.
Alig confidence												.																									.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	K	I	K	V	G	V	L	G	A	T	G	S	V	G	Q	R	F	V	Q	L	L	A	D	H	P	X	F	E	L	T	A	L	A	A	.	.	.	.	.	.	.	.	.	.	.	.	S	E	R	S	A	G	K	K	Y	K	D	A	C	Y	W	F	Q	D	R	D	I	P	E	N	I	K	D	X	V	V	I	P	T
Template Known Secondary structure										T	T	T	S											T	T		S	S									.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	T	T	S	B					S					S	S								T		B				S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.													.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.												140	.	.	.	.	.
Predicted Secondary structure																																																	.	.															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	P	A	N	L	K	W	D	E	V	G	V	D	V	V	A	E	A	T	G	L	F	L	T	D	E	T	A	R	K	H	I	T	A	G	A	K	K	V	V	M	T	G	P	S	K	D	.	.	N	T	P	M	F	V	K	G	A	N	F	D	K	Y	.	.	.	.	.	.	.	.	.	.	.	A	G	Q	D	I	V
Query Conservation																																																	.	.															.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.																																						.	.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.
Template Sequence		D	P	K	H	E	E	F	E	.	.	D	V	D	I	V	F	S	A	L	P	S	D	L	A	K	K	F	E	P	E	F	A	K	E	G	K	L	I	F	S	N	A	S	A	Y	R	X	E	E	D	V	P	L	V	I	P	E	V	N	A	D	H	L	E	L	I	E	I	Q	R	E	K	R	G	W	D	G	A	I	I
Template Known Secondary structure			T	T	S	G	G	G	T	.	.	T																							T	T								S	T	T	T	T		T	T	S		B							G	G	G	G	G												S	S
Template Predicted Secondary structure										.	.
Template SS confidence
		75	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		S	N	A	S	C	T	T	N	C	L	A	P	L	A	K	V	I	N	D	N	F	G	I	I	E	G	L	M	T	T	V	H	A	T	T	A	T	Q	K	T	V	D	G	P	S	H	K	D	W	R	G	G	R	G	A	S	Q	N	I	I	P	S	S	T	G	A	A	K	A	V	G	K	V	L	P	E	L	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.																													.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.
Template Sequence		T	N	P	N	C	S	T	I	C	A	V	I	T	L	K	P	I	X	D	K	F	G	L	E	A	V	F	I	A	T	X	Q	A	V	S	G	A	G	Y	N	G	.	.	.	.	.	.	.	.	V	P	S	X	A	I	L	D	N	L	I	P	F	I	K	N	E	E	E	K	X	Q	T	E	S	L	K	L	L	G	T
Template Known Secondary structure																									S								B		S	G	G	G		T	T	T	.	.	.	.	.	.	.	.	S						T	T			B	S			T	T													T	S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.									.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
											223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.											.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	N	G	K	L	T	G	M	A	F	R	V	P	T	P	N	V	S	V	V	D	L	T	V	R	L	E	K	A	A	T	Y	E	Q	I	K	A	A	V	K	A	A	A	E	G	E	M	K	G	V	L	G	Y	T	E	D	D	V	V	S	T	.	.	.	.	.	.	.	.	.	.	D
Query Conservation		.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	D	G	K	V	E	L	A	N	F	K	I	S	A	S	C	N	R	V	A	V	I	D	G	H	T	E	S	I	F	V	K	T	K	E	G	A	E	P	E	E	I	K	E	V	X	D	K	F	D	P	L	K	D	L	N	L	P	T	Y	A	K	P	I	V	I	R	E	E	I	D	R	P	Q	P	R	L	D	R
Template Known Secondary structure				T	T															B		S		S	S											S	S																T	T	T	T	S			T	T				S						S	T	T								T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		F	N	G	E	V	C	T	S	V	F	D	A	K	A	G	I	A	L	N	D	N	F	V	K	L	V	S	W	Y	D	N	.	E	T	G	Y	S	N	K	V	L	D	L	I	A	H	I	S	K
Query Conservation																																	.
Alig confidence												.	.																				.
Template Conservation												.	.
Template Sequence		N	E	G	N	G	X	S	I	V	V	.	.	G	R	I	R	K	D	P	I	F	D	V	K	Y	T	A	L	E	H	N	T	I	R	G	A	A	G	A	S	V	L	N	A	E	Y	F	V	K
Template Known Secondary structure		T	G	G	G	G	T	S				.	.							S	S	S	S									T	T	T	T	T	T
Template Predicted Secondary structure												.	.
Template SS confidence
		305	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions