Job Description P0A9B2 Confidence 100.00% Date Thu Jan 5 11:09:48 GMT 2012 Rank 7 Aligned Residues 327 % Identity 51% Template c1hdgO_ PDB info PDB header:oxidoreductase (aldehy(d)-nad(a)) Chain: O: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: the crystal structure of holo-glyceraldehyde-3-phosphate dehydrogenase2 from the hyperthermophilic bacterium thermotoga maritima at 2.53 angstroms resolution Resolution 2.50 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		K	V	G	I	N	G	F	G	R	I	G	R	I	V	F	R	A	A	Q	K	R	S	.	.	D	I	E	I	V	A	I	N	D	L	L	D	A	D	Y	M	A	Y	M	L	K	Y	D	S	T	H	G	R	F	D	G	T	V	E	V	K	D	G	H	L	I	V	N	G	K	K	I	R	V	T	A	E	R	D	P	A
Query Conservation																								.	.
Alig confidence																								.	.
Template Conservation
Template Sequence		R	V	A	I	N	G	F	G	R	I	G	R	L	V	Y	R	I	I	Y	E	R	K	N	P	D	I	E	V	V	A	I	N	D	L	T	D	T	K	T	L	A	H	L	L	K	Y	D	S	V	H	K	K	F	P	G	K	V	E	Y	T	E	N	S	L	I	V	D	G	K	E	I	K	V	F	A	E	P	D	P	S
Template Known Secondary structure									S														T		T	T									S	S													T	T	T				S	S						S	S					T	T									S	S	G	G
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		N	L	K	W	D	E	V	G	V	D	V	V	A	E	A	T	G	L	F	L	T	D	E	T	A	R	K	H	I	T	A	G	A	K	K	V	V	M	T	G	P	S	K	D	N	T	P	M	F	V	K	G	A	N	F	D	K	Y	A	G	Q	.	D	I	V	S	N	A	S	C	T	T	N	C	L	A	P	L	A	K
Query Conservation																																																															.
Alig confidence																																																															.
Template Conservation
Template Sequence		K	L	P	W	K	D	L	G	V	D	F	V	I	E	S	T	G	V	F	R	N	R	E	K	A	E	L	H	L	Q	A	G	A	K	K	V	I	I	T	A	P	A	K	G	E	D	I	T	V	V	I	G	C	N	E	D	Q	L	K	P	E	H	T	I	I	S	C	A	S	C	T	T	N	S	I	A	P	I	V	K
Template Known Secondary structure		G	S						T								S	S	S			B					T					T	T		S					S	S			B	S		S					T	T	T	T	G	G	G			T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	N	D	N	F	G	I	I	E	G	L	M	T	T	V	H	A	T	T	A	T	Q	K	T	V	D	G	P	S	H	K	D	W	R	G	G	R	G	A	S	Q	N	I	I	P	S	S	T	G	A	A	K	A	V	G	K	V	L	P	E	L	N	G	K	L	T	G	M	A	F	R	V	P	T	P	N	V	S	V
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		V	L	H	E	K	F	G	I	V	S	G	M	L	T	T	V	H	S	Y	T	N	D	Q	R	V	L	D	L	P	.	H	K	D	L	R	R	A	R	A	A	A	V	N	I	I	P	T	T	T	G	A	A	K	A	V	A	L	V	V	P	E	V	K	G	K	L	D	G	M	A	I	R	V	P	T	P	D	G	S	I
Template Known Secondary structure																						T	T	S	B	S	S	S			.		S	S	T	T	T	T	S	B	G	G	G								T										G	G	G	T	T	T									S		S	S
Template Predicted Secondary structure																															.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	L	T	V	R	L	E	K	A	A	T	Y	E	Q	I	K	A	A	V	K	A	A	A	E	G	E	M	K	G	V	L	G	Y	T	E	D	D	V	V	S	T	D	F	N	G	E	V	C	T	S	V	F	D	A	K	A	G	I	A	L	N	D	N	F	V	K	L	V	S	W	Y	D	N	E	T	G	Y	S	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	D	L	T	V	L	V	E	K	E	T	T	V	E	E	V	N	A	V	M	K	E	A	T	E	G	R	L	K	G	I	I	G	Y	N	D	E	P	I	V	S	S	D	I	I	G	T	T	F	S	G	I	F	D	A	T	I	T	N	V	I	G	G	K	L	V	K	V	A	S	W	Y	D	N	E	Y	G	Y	S	N
Template Known Secondary structure									S	S																T	T	T	T	T	T	T						S				G	G	G	G	T	T				S					T	T	T					T	T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	L	D	L	I	A	H	I	S	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	V	D	T	L	E	L	L	L	K
Template Known Secondary structure										G	G	G
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions