Return to main results Retrieve Phyre Job Id

Job DescriptionP0A9B2
Confidence100.00%DateThu Jan 5 11:09:48 GMT 2012
Rank13Aligned Residues326
% Identity50%Templatec1cerC_
PDB info PDB header:oxidoreductase (aldehyde(d)-nad(a))Chain: C: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: determinants of enzyme thermostability observed in the2 molecular structure of thermus aquaticus d-glyceraldehyde-3 3-phosphate dehydrogenase at 2.5 angstroms resolution
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN
Query Conservation 






 
 


   
 
      





        
 
   

  
     
      
 
 
  
 
        
Alig confidence 






















.























































Template Conservation 






 




   


    .  





       



  

  
     
      
 
 
  
 
    

  
Template Sequence  MKVGINGFGRIGRQVFRILHSRG. VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKE
Template Known Secondary structure 


STT.


SS


TTT
S
SS

SSTT

S
GGG
Template Predicted Secondary structure 






.






















Template SS confidence 















































































   1........10.........20... ......30.........40.........50.........60.........70.........
 
   83......90.........100.........110.........120.........130.........140.. .......150.........160
Predicted Secondary structure 
































..




Query SS confidence 



























































. .

















Query Sequence  LKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQ. . DIVSNASCTTNCLAPLAK
Query Conservation 
      




 


     
 
   
  


 
  


     
  
 


       .. 



 




 


 

Alig confidence 



























































..

















Template Conservation 
 
   






 

     
 
   
 



 

 


     
 

 


          



 



  


 

Template Sequence  IPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMK
Template Known Secondary structure  S
T
SSS

BGGGGGGT
SSS

BS
S

TTTSGGG

TTT




TT
Template Predicted Secondary structure 





































Template SS confidence 















































































   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   161........170.........180.........190.........200.........210.........220.........230.........240
Predicted Secondary structure 











































Query SS confidence 















































































Query Sequence  VINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSV
Query Conservation   
   


    





 
  
   
     
 
  
  
 



  

    
  


 
 


   
 



  
  
Alig confidence 




























.

















































Template Conservation   
   


    





 
  
   
  .  
 
  
    



  

 



  


 
 


 
 





   
 
Template Sequence  VLEEAFGVEKALMTTVHSYTNDQRLLDLP. HKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSI
Template Known Secondary structure  T


TTSBSSS

.
SSTTTTSBGGG





GGGTTTS
SS
Template Predicted Secondary structure 













.

























Template SS confidence 















































































   160.........170.........180........ .190.........200.........210.........220.........230........
 
   241........250.........260.........270.........280.........290.........300.........310.........320
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  VDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSN
Query Conservation    
   
    
 


      
       

       

 
      
 
 
           


  




 

  
Alig confidence 





























































.
















Template Conservation   

 
   
  
 


   

 
    
 
 
       

 
      
 
 
        .   
   




 


 
Template Sequence  SDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALG. NMVKVFAWYDNEWGYAN
Template Known Secondary structure  SS


TTTBTT
S


GGGSTT


SGGG
T.T
TT
Template Predicted Secondary structure 



























.




Template SS confidence 















































































   240.........250.........260.........270.........280.........290.........300. ........310........
 
   321........330.
Predicted Secondary structure 

Query SS confidence 










Query Sequence  KVLDLIAHISK
Query Conservation 
  
       
Alig confidence 










Template Conservation 
  
       
Template Sequence  RVADLVELVLR
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 










   320.........330
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions