 |
| Job Description | P07364 | | Confidence | 67.71% | Date | Thu Jan 5 11:00:17 GMT 2012 |
| Rank | 281 | Aligned Residues | 64 |
| % Identity | 20% | Template | c3trkA_ |
| PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:nonstructural polyprotein; |
PDBTitle: structure of the chikungunya virus nsp2 protease
|
| Resolution | 2.40 Å |
|
| | |
195 | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | |
|
|
|
. | 250 | . | . | . | . | . | . | . | . | . | 260 |
| Predicted Secondary structure | |
 | | |  |
|  | | | |
|
|
| | | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | | | | | . | . | . | . | . |
|
|
| | | |
|
| | | | | | | | | | | | . | . | . | . | | | | |
|
|
| | | | | |
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
L | V | R | V | R | Q | E | L | A | N | Y | V | D | F | A | P | L | N | L | L | A | K | Q | Y | T | V | P | G | P | F | D | A | I | F | C | . |
. |
. |
. |
. |
R | N | V | M | I | Y | F | D | Q | T | T | Q | Q | E | I | L | R | R | F | . |
. |
. |
. |
V | P | L | L | K | P | D | G | L | L | F | A |
| Query Conservation | |
| | |
| | | |
|
| | |
| |
| | | |
|
| | | | | | | | | | | |
|
|
| |
| . | . | . | . | . |
|
|
|
|
|
|
| | | | | | | |
|
| | |
| . | . | . | . | | | |
| |
|
|
| |
| |
|
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
|
| |
|
| |
| |
|
|
| | | | | |
| |
| . | . |
| |
| | |
|
| |
|
|
|
|
|
|
| | |
|
| |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
|
| |
| | |
|
|
|
|
| |
| |
|
| Template Sequence | |
T | W | V | A | P | L | G | V | R | G | A | D | Y | T | Y | N | L | E | L | . |
. |
G | L | P | A | T | L | G | R | Y | D | L | V | V | I | N | I | H | T | P | F | R | I | H | H | Y | Q | Q | C | V | D | H | A | X | K | L | Q | X | L | G | G | D | S | L | R | L | L | K | P | G | G | S | L | L | I |
| Template Known Secondary structure | |
| | | | | T | T |
| S | S |
| S | | | |
| G | G | G | . | . |
|
|
| G | G | G |
|
| | | | | | | |
|
|
|
|
|
| S | S | | | | | | | | | | | | | | | | | | | G | G | G | G | | | | | | | | | |
| Template Predicted Secondary structure | |
| | | |
|
|
|
|
|
|
| | | | | | |
|
| . | . |
|
|
|
|
|
|
|
| | | | | | | |
|
|
|
| | | | | | | | | | | | | | | | | | | | | | | | | | |
|
|
|
|
| | | | |
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
1187 | . | . | 1190 | . | . | . | . | . | . | . | . | . | 1200 | . | . | . | . | . | |
|
. | . | . | . | 1210 | . | . | . | . | . | . | . | . | . | 1220 | . | . | . | . | . | . | . | . | . | 1230 | . | . | . | . | . | . | . | . | . | 1240 | . | . | . | . | . | . | . | . | . | 1250 | . | . | . | . | . | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
