 |
Job Description | P07364 | Confidence | 75.14% | Date | Thu Jan 5 11:00:17 GMT 2012 |
Rank | 277 | Aligned Residues | 99 |
% Identity | 14% | Template | c1pbyA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda |
PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution
|
Resolution | 1.70 Å |
|
 |
  |   |
14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | |
|
. | . | . | . | . | 50 | . | . | . | . | |
|
|
|
|
|
. | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  | . | . |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | Q | M | T | E | R | L | A | L | S | D | A | H | F | R | R | I | S | Q | L | I | Y | Q | R | A | G | I | V | L | A | D | . |
. |
H | K | R | D | M | V | Y | N | R | L | . |
. |
. |
. |
. |
. |
V | R | R | L | R | S | L | G | L | T | D | F | G | H | Y | L | N | L | L | E | S | N | Q | H | S | G | E | W | Q | A | F |
Query Conservation |   |
  |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|
|   |   |   |   | . | . |   |
|   |   |   |
|   |   |
|
| . | . | . | . | . | . |   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|
|
|   |
|
|   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |   |
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|
|
|
|   |
|
|
|   |
|
|
|
|
|   |   |
|
|   |   |
|
Template Sequence |   |
M | M | R | N | H | G | V | A | L | E | P | E | E | R | A | A | I | V | R | H | L | S | D | T | R | G | L | S | L | A | E | T | E | E | R | R | Y | I | L | E | R | E | P | V | A | W | D | E | G | P | D | T | S | M | T | Q | T | C | G | R | C | H | S | Y | A | R | V | A | L | Q | R | R | T | P | E | D | W | K | H | L |
Template Known Secondary structure |   |
 |  |  |  | S |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
|
| S | G | G | G | T | T |
|  |  |  |  |  | T |
| S | S |
|
|
|
|
| S | S |  |  |  |  |  |  |  | S | S | S | S |
| T |  |  |  |  | T |  |  |  |
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
43 | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . |
  |
  |   |
86 | . | . | . | |
|
|
|
|
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |
Predicted Secondary structure |   |
 |  |  |  | . | . | . | . | . |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | N | S | L | . |
. |
. |
. |
. |
T | T | N | L | T | A | F | F | R | E | A | H | H | F | P | L | L | A | D | H | A | R | R |
Query Conservation |   |
|   |   |
| . | . | . | . | . |
|
|   |
|
|   |
|
|
|
|   |   |   |
|   |   |
|   |   |   |
|
|
|
Alig confidence |   |
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |
|
|   |
|
|
|
|
|
|
|   |   |
|
|
|   |
|   |   |
|
|   |   |
|   |   |
|
Template Sequence |   |
V | N | F | H | L | G | Q | F | P | T | L | E | Y | Q | A | L | A | R | D | R | D | W | W | G | I | A | Q | A | E | I | I | P |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |
| G | G | G | G | G | S | T | T | T | T | T | T | T |  |  |  |  |  |  |  | T |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
123 | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|