Job Description P33362 Confidence 96.67% Date Thu Jan 5 11:52:05 GMT 2012 Rank 37 Aligned Residues 221 % Identity 13% Template d1zbma1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.30

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	K	V	G	S	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A	W	K	N	A	Q	Q	G	Y
Query Conservation
Alig confidence																																				.	.																					.	.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.																					.	.	.												.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	R	V	A	H	T	P	D	A	D	D	A	F	X	F	Y	A	X	T	H	G	K	V	D	T	W	L	E	I	E	H	V	I	.	.	E	D	I	E	T	L	N	R	K	A	F	N	A	E	Y	E	V	T	A	I	.	.	.	S	A	H	A	Y	A	L	L	D	D	K	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S	S												T	T		S			S								.	.										G	G	G	T			S					.	.	.						T	T	S	T	T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.																					.	.	.												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	P	A	F	E	K	A	Y	G	F	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	Y	R	I	L	S	A	G	A	S	V	G	D	G	Y	G	P	V	V	V	A	.	.	.	.	.	.	.	.	K	S	E	I	S	L	D	G	K	R	I	A	V	P	G	R	.	.	.	.	.	.	.	.	.	.	.	Y	T	T	A	N	L	L	L	K	L	A	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.					S	S						S	S								.	.	.	.	.	.	.	.	S	S					T	T						S		T	.	.	.	.	.	.	.	.	.	.	.	T	S										.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template SS confidence
													67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.									.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.												.	.	.	.	.	.	.	110	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.							.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.																					.	.	.	.	.	.
Query SS confidence																																										.																					.	.	.	.	.	.
Query Sequence		L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	P	V	.	A	A	L	G	L	Q	T	L	S	D	P	Q	G	V	Q	P	I	Y	A	P	.	.	.	.	.	.	A	P	V	V	R	E	S	V	L	R	E	Y	P
Query Conservation																																										.																					.	.	.	.	.	.
Alig confidence																	.	.	.	.	.																					.																					.	.	.	.	.	.
Template Conservation																	.	.	.	.	.
Template Sequence		V	E	D	F	E	P	V	E	X	P	F	D	R	I	I	.	.	.	.	.	Q	A	V	L	D	E	E	V	D	A	G	L	L	I	H	E	G	Q	I	T	Y	A	D	Y	G	L	K	C	V	L	D	L	W	D	W	W	S	E	Q	V	K	L	P	L	P	L	G	L	N	A	I	R	R	D	L	S	V	E	V	Q
Template Known Secondary structure			S	S								G	G	G			.	.	.	.	.					T	T	S	S	S						S	G	G	G	G	T	G	G	G	G	T													T	T		S	S											T	T	S
Template Predicted Secondary structure																	.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S	I	A	V	E	G	L	.	D	A	K	K	V	A	A	D	Y	L	K
Query Conservation																																.
Alig confidence																																.
Template Conservation
Template Sequence		E	E	F	L	R	A	X	R	E	S	I	A	F	A	I	E	N	P	D	E	A	I	E	Y	A	X	K	Y	S	R	G	L	D	R	E	R	A	K	R	F	A	X
Template Known Secondary structure																		S									G	G	G		T	T
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions