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Job DescriptionP33362
Confidence98.62%DateThu Jan 5 11:52:05 GMT 2012
Rank29Aligned Residues207
% Identity15%Templated1xs5a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.85

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60.........70.........80.........90.........100....
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Query Sequence  SPVKVGSKIDTEGALLGNIILQVLESHGVPTVNKVQLGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQG
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Template Sequence  ETVGVGVLSEPHARLL. EIAKEEVKKQHIELRIVE. FTNYVALNEAVMRGDILMNF. . . . . . . . . . . . . . . . . FQHVPHM
Template Known Secondary structure 
STT.TTT.
S
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   7..10.........20.. .......30.........40 .........50.........60 .......
 
   105....110.........120.........130.........140.........150.........160.........170.........180....
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Query Sequence  YEKVKKLDSEHNKLIWLTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEKAYGF
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Template Sequence  QQFNQEHNGDLVSVGNVHVEPLAL. . . . . . . . . . . YSRTYRHVSDFPA. . . . . . GAVIAIPND. SSNEARALRLLEAAGF
Template Known Secondary structure  T




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SGGG

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   68.70.........80.........90. ........100.... .....110... ......120.........
 
   185 ....190.........200.........210.........220........ .230.........240..
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Query Sequence  K. . . . . . . . . . . . . . . . . . LGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAAL. . . . GLQTLSDPQGVQPI
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Template Sequence  IRMRAGSGLFATVEDVQQNVRNVVLQEVESALL. . . . . . . PRVFDQVDGAVINGNYAIMAGLSARRDGLAVEPDASAYA.
Template Known Secondary structure 

TT

TT

GGG
TT


GGG.......GGGSS
TT

TTTT
S
S
GGGG
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   130.........140.........150.........160.. .......170.........180.........190.........200.
 
   243......250.........260.........270.........280.........290.........300.
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Query Sequence  YAPAPVVRESVLREYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYLKQK
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Template Sequence  . . NVLVVKRG. NEADARVQAVLRALCG. . . . . . . . . . . . . . . . . . . . . . GRVRTYLKER
Template Known Secondary structure  ..TT.
TT
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   202....... 210.........220..... ....230.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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