Job Description P33362 Confidence 98.62% Date Thu Jan 5 11:52:05 GMT 2012 Rank 29 Aligned Residues 207 % Identity 15% Template d1xs5a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.85

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	V	K	V	G	S	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A	W	K	N	A	Q	Q	G
Query Conservation
Alig confidence																		.																			.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.																			.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	T	V	G	V	G	V	L	S	E	P	H	A	R	L	L	.	E	I	A	K	E	E	V	K	K	Q	H	I	E	L	R	I	V	E	.	F	T	N	Y	V	A	L	N	E	A	V	M	R	G	D	I	L	M	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Q	H	V	P	H	M
Template Known Secondary structure										S	T	T						.									T	T	T								.		S												T	S	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.																			.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60																		.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	P	A	F	E	K	A	Y	G	F
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.										.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.										.
Template Sequence		Q	Q	F	N	Q	E	H	N	G	D	L	V	S	V	G	N	V	H	V	E	P	L	A	L	.	.	.	.	.	.	.	.	.	.	.	Y	S	R	T	Y	R	H	V	S	D	F	P	A	.	.	.	.	.	.	G	A	V	I	A	I	P	N	D	.	S	S	N	E	A	R	A	L	R	L	L	E	A	A	G	F
Template Known Secondary structure									T																	.	.	.	.	.	.	.	.	.	.	.			S	S			S	G	G	G			T	.	.	.	.	.	.	T								S	.														T	T	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.										.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.												.	.	.	.	.	.	.	.	100	.	.	.	.							.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		185																			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.					.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Query Sequence		K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	P	V	A	A	L	.	.	.	.	G	L	Q	T	L	S	D	P	Q	G	V	Q	P	I
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.																							.	.	.	.														.
Template Conservation																																			.	.	.	.	.	.	.																																								.
Template Sequence		I	R	M	R	A	G	S	G	L	F	A	T	V	E	D	V	Q	Q	N	V	R	N	V	V	L	Q	E	V	E	S	A	L	L	.	.	.	.	.	.	.	P	R	V	F	D	Q	V	D	G	A	V	I	N	G	N	Y	A	I	M	A	G	L	S	A	R	R	D	G	L	A	V	E	P	D	A	S	A	Y	A	.
Template Known Secondary structure						T	T			T	T			G	G	G					T	T									G	G	G		.	.	.	.	.	.	.				G	G	G	S	S												T	T			T	T	T	T		S				S		G	G	G	G		.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.																																								.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.								.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S	I	A	V	E	G	L	D	A	K	K	V	A	A	D	Y	L	K	Q	K
Query Conservation
Alig confidence		.	.									.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.									.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	N	V	L	V	V	K	R	G	.	N	E	A	D	A	R	V	Q	A	V	L	R	A	L	C	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	V	R	T	Y	L	K	E	R
Template Known Secondary structure		.	.							T	T	.		T	T												T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.									.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				202	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.																							.	.	.	.	230	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions