Job Description P33362 Confidence 96.81% Date Thu Jan 5 11:52:05 GMT 2012 Rank 36 Aligned Residues 230 % Identity 13% Template d1sbpa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.70

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.						.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.																								.
Query SS confidence																													.	.	.	.	.																								.
Query Sequence		S	P	V	K	V	G	S	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	.	.	.	.	.	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	R	G	A	I	T	S	G	.	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A	W
Query Conservation																													.	.	.	.	.																								.
Alig confidence																													.	.	.	.	.																								.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	D	I	Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	E	T	G	D	N	V	V	I	D	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	T	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L
Template Known Secondary structure												S	T	T																				S										S											T	T				S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.																		.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		K	N	A	Q	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	.	.	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	P
Query Conservation																												.	.
Alig confidence																												.	.																		.	.														.	.	.	.	.	.
Template Conservation																																															.	.														.	.	.	.	.	.
Template Sequence		A	L	A	Y	D	V	N	A	I	A	E	R	G	R	I	D	K	N	W	I	K	R	L	P	D	D	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	.	.	I	H	D	W	N	D	L	I	K	P	G	V	S	.	.	.	.	.	.	V	I	T	P	N	P	K	S	S	G	G	A	R	W
Template Known Secondary structure		S	S										T	T	S	S		T	T	G	G	G	G	S						S			B								T	T		T	T		.	.			S	G	G	G	G	G	S	T	T			.	.	.	.	.	.						T	T	T
Template Predicted Secondary structure																																															.	.														.	.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.															.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.						.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Query Sequence		A	F	E	K	A	Y	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	P	.	.	.	.	.	V	A	A	L	G	L	Q	T	L	S	D	P	Q
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Conservation
Template Sequence		N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D	Q	A	K	A	E	D	F	V	K	A	L	F	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	T	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E
Template Known Secondary structure														T	T	T															T						S	S										T	S				S															T	T	T	T	T	T							S
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	Q	P	I	Y	A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S
Query Conservation
Alig confidence																																.	.	.
Template Conservation																																.	.	.
Template Sequence		S	I	L	A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	D	T	K	A	V	A	E	A	Y	L	K	Y	.	.	.	L	Y	S	P	E	G	Q	E	I	A	A	K
Template Known Secondary structure					B															T											G	.	.	.	G	G	S
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.				.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions