Job Description P33362 Confidence 100.00% Date Thu Jan 5 11:52:05 GMT 2012 Rank 5 Aligned Residues 261 % Identity 12% Template d1r9la_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.59

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	P	L	Q	A	A	S	P	V	K	V	G	S	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A
Query Conservation
Alig confidence																																													.																											.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.																											.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	L	P	G	K	G	I	T	V	N	P	V	Q	S	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	.	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T	T	T									S		G	G	G														T	T									.													T	S	S									T	T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																																															.																		.
Query SS confidence																																																															.																		.
Query Sequence		W	K	N	A	Q	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	.	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	.
Query Conservation																																																															.																		.
Alig confidence		.	.	.	.	.	.	.	.																																																						.																		.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G
Template Known Secondary structure		.	.	.	.	.	.	.	.							T	T	G	G	G	T					S		S																			T			B	G	G	G	G	G	S					G	G	G		S	S	S	S	S	S								T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
							176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.					.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																																						.	.	.	.											.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																																						.	.	.	.											.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	P	A	F	E	K	A	Y	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	P	V	A	A	L	.	.	.	.	G	L	Q	T	L	S	D	P	Q	G	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.																																																						.	.	.	.											.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.													.	.																																								.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation																			.	.
Template Sequence		C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	.	.	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A
Template Known Secondary structure													T	T		T	T	T	.	.						S															T	T										S	S	S					S		B	T	T	T					B		S	S				T	T		T	T
Template Predicted Secondary structure																			.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
												239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.				.	.	.	.	.	.	.	300	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																							.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																																							.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	V	Q	P	I	Y	A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S	I	A	V	E	G	L	D	A	K	K	.	.	.	V	A	A	D	Y	L	K	Q	K
Query Conservation		.	.	.	.	.	.	.	.	.	.																																																							.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																														.	.																								.	.	.
Template Conservation																																									.	.
Template Sequence		D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	A	A	A	K	L	F	A	I	M	.	.	Q	L	P	V	A	D	I	N	A	Q	N	A	I	M	H	D	G	K	A	S	E	G	D	I	Q	G	H	V	D	G	W	I	K	A	H
Template Known Secondary structure				B		T	T	S		B		S	S		S																										.	.																	T			S															T
Template Predicted Secondary structure																																									.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions