Job Description P33362 Confidence 95.99% Date Thu Jan 5 11:52:05 GMT 2012 Rank 43 Aligned Residues 221 % Identity 13% Template d1amfa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.75

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		S	P	V	K	V	G	S	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	.	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A	W	K	N	A	Q	Q
Query Conservation																																																					.
Alig confidence																	.																				.	.															.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.																				.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	K	I	T	V	F	A	A	A	S	L	T	N	A	M	.	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	.	.	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	Q	K	W
Template Known Secondary structure										G	G	G					.																				.	.													T				S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																	.																				.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.																		.	.	60	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	.	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	P	A	F	E	K	A	Y
Query Conservation																																									.
Alig confidence																					.	.	.	.																	.															.	.
Template Conservation																					.	.	.	.																																.	.
Template Sequence		M	D	Y	A	V	D	K	K	A	I	D	T	A	T	R	Q	T	L	L	.	.	.	.	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	.	.	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L
Template Known Secondary structure								T	T		B		G	G	G						.	.	.	.										T	T									S	T	T								T	T	.	.								T	T	T														T
Template Predicted Secondary structure																					.	.	.	.																																.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.					.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		183	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		G	F	.	.	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	P	V	A	A	L	G	L	Q	T	L	S	D	P	Q	G	V	Q	P	I	Y	A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M
Query Conservation				.	.
Alig confidence				.	.																	.	.	.	.	.																																																.	.
Template Conservation																						.	.	.	.	.																																																.	.
Template Sequence		G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	.	.	.	.	.	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	.	.	H	N	N	A	T	V
Template Known Secondary structure		T						G	G	G					S	S						.	.	.	.	.					T	T	S	S	S													S	S									G	G	G	S										B	T	T	.	.			S
Template Predicted Secondary structure																						.	.	.	.	.																																																.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.						.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A
Query Conservation
Alig confidence									.	.	.
Template Conservation									.	.	.
Template Sequence		K	A	F	Y	D	Y	L	.	.	.	K	G	P	Q	A	A	E	I	F	K	R
Template Known Secondary structure									.	.	.	T	S
Template Predicted Secondary structure									.	.	.
Template SS confidence
		210	.	.	.	.	.	.				.	.	.	220	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions