Job Description P33362 Confidence 66.32% Date Thu Jan 5 11:52:05 GMT 2012 Rank 89 Aligned Residues 150 % Identity 11% Template c3ombA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: crystal structure of extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis Resolution 2.10 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																					.	.																													.	.													.
Query SS confidence																					.	.																													.	.													.
Query Sequence		S	L	P	L	Q	A	A	S	P	V	K	V	G	S	K	I	D	T	E	.	.	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	.	.	P	V	V	R	G	A	I	T	S	G	E	L	.	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D
Query Conservation																					.	.																													.	.													.
Alig confidence																					.	.																													.	.													.
Template Conservation
Template Sequence		T	T	T	A	D	G	K	P	I	V	T	V	L	V	K	K	N	A	N	Q	E	K	X	A	N	X	Q	W	A	K	D	L	E	A	D	C	D	C	K	I	E	W	Q	E	V	T	R	E	A	W	A	Q	Q	K	N	A	T	L	A	S	G	D	I	A	D	V	N	L	N	G	Y	G	A	V	E	A	Y	Q	Y	P
Template Known Secondary structure			B		T	T			B										T	T	B			G	G	G												T	S																							T				S				S	S			T						S	T
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.																.	.	.	.	.	.	.	140	.	.	.	.	.				.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Query Sequence		E	N	D	A	A	W	K	N	A	Q	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	R	Q	D	V	A	E	K	N	K	L	T	.	.	.	S	L	A	D	L	S	R	Y	L
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Template Conservation
Template Sequence		G	X	F	E	D	L	S	K	D	L	D	K	L	P	N	V	K	A	F	F	K	Q	K	P	D	A	K	K	X	S	T	D	S	K	G	R	I	Y	A	I	A	D	G	R	G	K	A	Y	S	G	T	G	Q	H	X	L	I	N	K	A	W	L	D	K	L	G	L	Q	V	P	T	T	W	D	E	L	E	N	V	L
Template Known Secondary structure		T	S	B			G	G	G	G	G	G	G																					T	T	S			S	S							G	G	G		S		S														T						B
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		155	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	G	G	T	F	K	L	A	A	S	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	F	K	T	Q	D	P	N	G	N	G	Q
Template Known Secondary structure							S		T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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