Job Description P33362 Confidence 80.71% Date Thu Jan 5 11:52:05 GMT 2012 Rank 72 Aligned Residues 190 % Identity 14% Template c3mplA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:virulence sensor protein bvgs; PDBTitle: crystal structure of bordetella pertussis bvgs vft2 domain (double2 mutant f375e/q461e) Resolution 2.10 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A	W	K	N	A	Q	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L
Query Conservation
Alig confidence																							.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	A	A	V	L	Q	L	L	Q	L	R	T	G	L	D	F	E	I	I	G	.	V	D	T	V	E	E	L	I	A	K	L	R	S	G	E	A	D	M	A	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	V	N	S	A	R	E	S	F
Template Known Secondary structure																							.		S												T	S	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					G	G	G	T	T	T
Template Predicted Secondary structure																							.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.																												.	.	.	.	.	.	380	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	P	A	F	E	K	A	Y	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D
Query Conservation
Alig confidence																							.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation																							.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Sequence		L	S	F	S	R	P	Y	V	R	N	G	M	V	I	V	T	R	Q	D	P	D	.	.	.	A	P	V	D	A	D	H	L	D	G	R	T	V	A	L	V	R	.	.	.	.	.	.	.	.	.	.	.	.	N	S	A	A	I	P	L	L	Q	R	.	.	.	R	Y	P	Q	A	K	V	V	T	A	D	N	P	S
Template Known Secondary structure																					S	S	.	.	.			T	T	T	T			T	T	S						T	.	.	.	.	.	.	.	.	.	.	.	.	T		T								.	.	.	S	S	T	T							S	S
Template Predicted Secondary structure																							.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.				.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.													.	.	.	.	.	.	.	.	430	.				.	.	.	.	.	.	.	.	440	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	.	.	.	D	G	P	V	A	A	L	G	L	Q	T	L	S	D	P	Q	G	V	Q	P	I	Y	A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T
Query Conservation																									.	.	.
Alig confidence					.	.	.	.																	.	.	.																																.	.	.	.
Template Conservation					.	.	.	.																																																			.	.	.	.
Template Sequence		E	A	M	.	.	.	.	L	M	V	A	N	G	Q	A	D	A	V	V	E	T	Q	I	S	A	S	Y	Y	V	N	R	Y	F	A	G	K	L	R	I	A	S	A	L	D	L	P	P	A	E	I	A	L	A	T	T	R	G	.	.	.	.	Q	T	E	L	M	S	I	L	N	K	A	L	Y	S	I	S	N	D	E
Template Known Secondary structure					.	.	.	.						T	S		S																		T	T	T									S											T	T	.	.	.	.														T	S
Template Predicted Secondary structure					.	.	.	.																																																			.	.	.	.
Template SS confidence
		446	.	.					.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.					.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
		276	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	Q	L	N	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	S	I	I	S	R
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		518	.	520	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions