Job Description P33362 Confidence 91.97% Date Thu Jan 5 11:52:05 GMT 2012 Rank 55 Aligned Residues 189 % Identity 11% Template c3kzgB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila Resolution 2.06 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A	W	K	N	A	Q	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L
Query Conservation
Alig confidence																							.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	D	I	D	L	X	Q	E	I	C	R	R	L	H	A	T	C	T	F	E	A	.	.	Y	I	F	D	D	L	F	P	A	L	K	N	R	E	V	D	L	V	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	X	I	I	T	D	E	R	K	K	H
Template Known Secondary structure															T								.	.			G	G	G							T	T	S	S	S				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		B							T	T
Template Predicted Secondary structure																							.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.																											.	.	.	.	90	.	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	P	A	F	E	K	A	Y	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D
Query Conservation
Alig confidence																							.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation																							.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Sequence		F	I	F	S	L	P	Y	X	E	S	N	S	Q	Y	I	T	T	V	D	S	K	.	.	.	.	I	S	T	F	D	D	L	H	G	K	K	I	G	V	R	K	.	.	.	.	.	.	.	.	.	.	.	.	G	T	P	Y	A	R	Q	V	L	S	E	N	R	N	N	Q	V	I	F	Y	E	L	I	Q	.	.	.
Template Known Secondary structure								S	B										T	T		S	.	.	.	.			S	G	G	G	G	T	T							T	.	.	.	.	.	.	.	.	.	.	.	.	T	S	T								T		S								S	S			.	.	.
Template Predicted Secondary structure																							.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.													.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.										.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.
Query Sequence		T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	.	.	.	.	.	.	.	.	.	G	P	V	A	A	L	G	L	Q	T	L	S	D	P	Q	G	V	Q	P	I	Y	A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A
Query Conservation																										.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																					.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation		.	.	.	.																																																										.	.	.	.
Template Sequence		.	.	.	.	D	X	L	L	G	L	S	N	N	Q	V	D	A	S	L	X	D	Y	E	A	A	K	Y	W	X	A	S	E	P	Y	A	Y	K	L	I	G	K	K	Y	K	L	I	G	K	K	I	S	I	G	E	G	Y	S	I	X	A	N	.	.	.	.	P	D	Q	F	V	L	I	K	K	I	N	K	I	L	L
Template Known Secondary structure		.	.	.	.								T	T	S	S	S												T	T	S	S	S		S	S		T	T	T			S											T	T		B						.	.	.	.	G	G	G
Template Predicted Secondary structure		.	.	.	.																																																										.	.	.	.
Template SS confidence
						158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.					.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		270	.	.	.	.		.	.	.	.	.	280	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		S	L	D	A	K	.	T	L	Q	Q	L	N	A	S
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		E	X	E	A	D	G	T	Y	L	R	L	Y	S	E
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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