Job Description P33362 Confidence 90.67% Date Thu Jan 5 11:52:05 GMT 2012 Rank 58 Aligned Residues 203 % Identity 12% Template c3k4uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:binding component of abc transporter; PDBTitle: crystal structure of putative binding component of abc transporter2 from wolinella succinogenes dsm 1740 complexed with lysine Resolution 2.62 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A	W	K	N	A	Q	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L
Query Conservation
Alig confidence																							.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	D	V	D	L	A	R	E	X	A	K	A	X	G	V	K	L	K	L	V	P	.	.	T	S	W	D	G	L	I	P	G	L	V	T	E	K	F	D	I	I	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	X	T	I	S	Q	E	R	N	L	R
Template Known Secondary structure															T								.	.			G	G	G							T	T	S		S				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		B							T	T
Template Predicted Secondary structure																							.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.																											.	70	.	.	.	.	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	P	A	F	E	K	A	Y	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D
Query Conservation
Alig confidence																									.	.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	N	F	V	E	P	Y	I	V	V	G	Q	S	L	L	V	K	K	G	L	E	K	G	.	.	V	K	S	Y	K	D	L	D	.	.	.	.	.	.	.	.	.	.	.	K	P	E	L	T	L	V	T	K	F	G	V	S	A	E	Y	A	A	K	R	L	F	K	N	A	K	L	K	T	Y	D	T	E	A	E	A
Template Known Secondary structure		S				S		S											T	T	T	T	T	T	.	.			S	G	G	G	G		.	.	.	.	.	.	.	.	.	.	.		S	S							T	T	S											S	S	S						S	S
Template Predicted Secondary structure																									.	.									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110												.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	.	.	D	G	P	V	A	A	L	G	L	Q	T	L	S	D	P	Q	G	V	Q	P	I	Y	A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L
Query Conservation																									.	.
Alig confidence			.	.	.	.	.	.																	.	.																																.	.	.	.												.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.																																																		.	.	.	.												.	.	.	.	.	.	.	.
Template Sequence		V	.	.	.	.	.	.	Q	E	V	L	N	G	K	A	D	X	F	I	F	D	L	P	F	N	V	A	F	X	A	Q	K	G	Q	G	Y	L	V	H	L	D	T	S	L	T	Y	E	P	L	G	W	A	I	K	K	G	.	.	.	.	D	P	D	F	L	N	W	L	N	H	F	.	.	.	.	.	.	.	.	L
Template Known Secondary structure			.	.	.	.	.	.					S	S	S	S																	T	T	T	T	T									S										T	T	.	.	.	.												.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.																																																		.	.	.	.												.	.	.	.	.	.	.	.
Template SS confidence
		147							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.									.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	L	N	A	S	I	A	V	E	G	L	D	A	K	K	V	A	A	D	Y	L	K	Q	K	G	W	T	K
Query Conservation
Alig confidence					.	.	.	.					.
Template Conservation					.	.	.	.					.
Template Sequence		A	Q	I	.	.	.	.	K	H	D	G	.	S	Y	D	E	L	Y	E	R	W	F	V	D	T	K	W	L	E
Template Known Secondary structure					.	.	.	.				S	.											T			S	G	G	G
Template Predicted Secondary structure					.	.	.	.					.
Template SS confidence
		209	210	.					.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions