Job Description P33362 Confidence 98.89% Date Thu Jan 5 11:52:05 GMT 2012 Rank 26 Aligned Residues 216 % Identity 15% Template c3k2dA_ PDB info PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus Resolution 2.60 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	Q	A	A	S	P	V	K	V	G	S	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A	W	K
Query Conservation
Alig confidence																																										.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	H	M	D	T	S	K	V	K	V	G	V	M	A	G	A	E	A	Q	V	A	E	V	A	A	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	T	.	F	T	D	Y	V	T	P	N	A	A	L	D	D	G	S	I	D	M	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Q
Template Known Secondary structure				S											T	T																										.		S		T	T	S								T	S		S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.																		.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	Q	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	P	A	F	E
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Sequence		H	K	P	Y	L	D	R	Q	V	E	D	R	D	Y	K	L	T	I	A	G	N	T	F	V	Y	P	I	A	G	Y	S	K	.	.	.	.	.	.	.	.	.	.	.	Q	V	K	S	V	A	A	L	A	D	.	.	.	.	.	.	.	G	V	R	I	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L
Template Known Secondary structure																																	S	.	.	.	.	.	.	.	.	.	.	.	S		S		S	T	T			T	.	.	.	.	.	.	.	T								S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.												120	.	.	.	.	.	.	.	.	.								130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		180	.	.	.	.																			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.
Query Sequence		K	A	Y	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	P	V	A	A	L	G	.	L	Q	T	L	S	D	P	Q	G	V	Q
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.																								.
Template Conservation																																								.	.	.	.	.	.	.
Template Sequence		E	Q	Q	G	L	I	K	L	R	P	E	V	G	L	L	A	T	V	R	D	I	V	E	N	P	K	N	I	T	I	M	E	L	D	A	A	Q	L	.	.	.	.	.	.	.	P	R	S	L	D	D	V	A	L	S	I	I	N	T	T	Y	A	S	S	I	N	L	T	P	E	K	D	G	V	F	V	E	D	K	E
Template Known Secondary structure				T	T	S					T	T			S	S			G	G	G					T	T									G	G	G		.	.	.	.	.	.	.				T	T	T	S	S										G	G	G	T								S					S	S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.								.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	Y	A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S	I
Query Conservation
Alig confidence														.	.														.	.	.
Template Conservation														.	.														.	.	.
Template Sequence		S	P	Y	V	N	L	I	V	A	R	Q	D	.	.	N	V	Q	N	E	N	V	Q	N	F	V	K	A	.	.	.	Y	Q	T	E	E	V	Y	T	A	A	K	E	I
Template Known Secondary structure		S	S									T	T	.	.	T	T	T	S										.	.	.		T	S
Template Predicted Secondary structure														.	.														.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions