Job Description P33362 Confidence 99.39% Date Thu Jan 5 11:52:05 GMT 2012 Rank 12 Aligned Residues 228 % Identity 13% Template c3ix1A_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans Resolution 2.40 Å

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		23	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		A	A	S	P	V	K	V	G	S	.	.	.	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A	W	K
Query Conservation											.	.	.
Alig confidence											.	.	.																												.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	E	T	V	E	V	M	L	D	W	Y	P	N	A	V	H	T	F	L	Y	V	A	I	E	N	G	Y	F	A	E	E	G	L	D	V	D	I	V	.	F	P	T	N	P	T	D	P	I	Q	L	T	A	S	G	A	I	P	L	A	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S	S	S			G	G	G									T	T					T	T							.			S	S	T	T									T	S		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																									.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	Q	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	P	A	F	E
Query Conservation
Alig confidence		.	.	.	.																																				.	.	.	.											.	.	.	.	.	.	.												.
Template Conservation		.	.	.	.																																				.	.	.	.											.	.	.	.	.	.	.												.
Template Sequence		.	.	.	.	Y	Q	P	D	V	I	L	A	R	S	K	D	L	P	V	V	S	V	A	S	V	V	R	S	P	L	N	H	V	M	F	L	A	E	Q	.	.	.	.	D	F	D	S	P	A	D	L	V	G	.	.	.	.	.	.	.	L	T	V	G	Y	P	G	I	P	V	N	.	E	P	I	L	K	T	M	V
Template Known Secondary structure		.	.	.	.											T	T												S									G	G	G	.	.	.	.			S	S	G	G	G	G	T	T	.	.	.	.	.	.	.	S						S		T	T		.
Template Predicted Secondary structure		.	.	.	.																																				.	.	.	.											.	.	.	.	.	.	.												.
Template SS confidence
						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.								.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.						.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.																							.
Query SS confidence																																																		.	.	.	.	.																							.
Query Sequence		K	A	Y	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	P	V	A	A	.	.	.	.	.	L	G	L	Q	T	L	S	D	P	Q	G	V	Q	P	I	Y	A	P	A	P	V	V	.	R	E	S	V
Query Conservation																																																		.	.	.	.	.																							.
Alig confidence																						.	.	.	.	.	.																							.	.	.	.	.																							.
Template Conservation																						.	.	.	.	.	.
Template Sequence		E	A	A	G	G	D	Y	E	Q	V	H	L	M	D	V	G	F	E	L	G	.	.	.	.	.	.	A	S	I	V	S	G	R	A	D	A	V	V	G	T	Y	I	N	H	E	Y	P	V	L	K	H	E	G	H	D	I	S	Y	F	N	P	V	D	Y	G	V	P	E	Y	D	E	L	V	L	I	S	N	E	A	Y
Template Known Secondary structure				T	T			G	G	G							T	T				.	.	.	.	.	.						S	S	S	S							T	T	T								T	T								G	G	G	T	T						S
Template Predicted Secondary structure																						.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.							.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S	I	A	V	E	G	L	D	A	K	K	V	A	A	D	Y	L	K	Q	K	G
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	E	S	G	E	V	L	A	A	F	.	.	.	.	.	.	.	.	.	.	.	W	R	A	A	L	K	G	Y	E	W	M	V	E	N	P	D	E	A	L	N	V	L	L	T	N	Q	D
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.	.														S											T	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.												.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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