Job Description P33362 Confidence 98.87% Date Thu Jan 5 11:52:05 GMT 2012 Rank 27 Aligned Residues 207 % Identity 15% Template c3ir1F_ PDB info PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis Resolution 2.15 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	V	K	V	G	S	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A	W	K	N	A	Q	Q	G
Query Conservation
Alig confidence																																					.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	E	I	V	F	G	T	T	V	G	D	F	G	D	M	V	K	E	Q	I	Q	P	E	L	E	K	K	G	Y	T	V	K	L	V	E	.	F	T	D	Y	V	R	P	N	L	A	L	A	E	G	E	L	D	I	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Q	H	K	P	Y	L
Template Known Secondary structure										S	S									T							T	T	T								.		S	S	S	S									T	S		S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.																		.	.	100	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	P	A	F	E	K	A	Y	G	F
Query Conservation
Alig confidence									.	.	.												.											.	.	.	.	.	.	.										.	.	.	.	.	.										.
Template Conservation									.	.	.												.											.	.	.	.	.	.	.										.	.	.	.	.	.										.
Template Sequence		D	D	F	K	K	E	H	.	.	.	N	L	D	I	T	E	V	F	Q	V	P	.	T	A	P	L	G	L	Y	P	G	K	.	.	.	.	.	.	.	L	K	S	L	E	E	V	K	D	.	.	.	.	.	.	G	S	T	V	S	A	P	N	D	.	P	S	N	F	A	R	V	L	V	M	L	D	E	L	G	W
Template Known Secondary structure									.	.	.												.	B								S	S	.	.	.	.	.	.	.	S		S	T	T	S			T	.	.	.	.	.	.	T								S	.														T	T	S
Template Predicted Secondary structure									.	.	.												.											.	.	.	.	.	.	.										.	.	.	.	.	.										.
Template SS confidence
		105	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.								.	.	.	.	.	.	.	140	.							.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
																					185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	P	V	A	A	L	G	.	.	L	Q	T	L	S	D	P	Q	G	V	Q	P	I	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.																								.	.									.	.	.
Template Conservation																																				.	.	.	.	.	.	.																																		.	.	.
Template Sequence		I	K	L	K	D	G	I	N	P	L	T	A	S	K	A	D	I	A	E	N	L	K	N	I	K	I	V	E	L	E	A	A	Q	L	.	.	.	.	.	.	.	P	R	S	R	A	D	V	D	F	A	V	V	N	G	N	Y	A	I	S	S	G	M	K	L	T	E	A	L	F	Q	E	P	S	.	.	.	F	A	Y
Template Known Secondary structure		S				T	T	S		G	G	G			G	G	G					T	T									G	G	G		.	.	.	.	.	.	.				G	G	G	S	S												T	T			G	G	G		S						.	.	.	S	T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.																																		.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200								.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.				.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S
Query Conservation
Alig confidence											.	.														.	.	.
Template Conservation											.	.														.	.	.
Template Sequence		V	N	W	S	A	V	K	T	A	.	.	D	K	D	S	Q	W	L	K	D	V	T	E	A	.	.	.	Y	N	S	D	A	F	K	A	Y	A	H	K
Template Known Secondary structure									G	G	.	.	G	T	T											.	.	.	T	S	S
Template Predicted Secondary structure											.	.														.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions