Job Description P33362 Confidence 93.72% Date Thu Jan 5 11:52:05 GMT 2012 Rank 49 Aligned Residues 231 % Identity 13% Template c3fxbB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of the ectoine-binding protein ueha Resolution 2.90 Å

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		25	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.																															.	.
Query SS confidence								.	.	.																															.	.
Query Sequence		S	P	V	K	V	G	.	.	.	S	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	.	.	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A	W	K
Query Conservation								.	.	.																															.	.
Alig confidence								.	.	.																															.	.
Template Conservation
Template Sequence		D	T	W	R	Y	A	F	E	E	A	M	T	D	V	Q	G	V	Y	A	Q	K	F	K	E	E	I	E	A	N	S	D	H	E	I	Q	L	F	P	Y	G	T	L	G	E	S	A	D	I	M	E	Q	T	Q	D	G	I	L	Q	F	V	D	Q	S	P	G	F	T	G	S	L	I	P	E	A	Q	V	F	F	V	P
Template Known Secondary structure									S	S		S	S	S																S	S	S								T	T	S	S		S											T	S		S										T	T	T	S	G	G	G	G	G	G	G	S	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
						100	.	.	.	.	.	.	.	.											.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure		.	.	.	.										.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.										.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	N	A	Q	Q	G	Y	E	K	V	.	.	.	.	.	.	.	.	.	.	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S
Query Conservation		.	.	.	.										.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.										.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Sequence		Y	L	L	P	T	D	Q	D	H	L	A	R	F	F	K	E	S	K	A	I	N	D	M	F	K	P	L	Y	A	D	Q	G	L	E	L	L	N	M	F	P	E	G	E	V	A	M	T	T	K	T	P	.	.	.	.	.	.	.	V	T	T	C	S	D	L	D	E	V	K	F	R	V	M	T	.	.	.	.	.	.
Template Known Secondary structure		T		S		S																	T	T	S						T	T	T																	S	S		.	.	.	.	.	.	.		S	S	G	G	G	S	T	T							S	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.																	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.								.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		A	E	F	I	E	R	A	D	A	L	P	A	F	E	K	A	Y	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	P	V	A	A	L	G	.	.	L	Q	T	L	S	D	P	Q	G	V	Q	P	I	Y
Query Conservation																																																																		.	.
Alig confidence		.	.	.	.	.	.														.	.	.	.	.									.	.	.	.	.																												.	.
Template Conservation		.	.	.	.	.	.														.	.	.	.	.									.	.	.	.	.
Template Sequence		.	.	.	.	.	.	N	P	L	L	V	E	S	Y	K	A	F	G	A	.	.	.	.	.	T	P	T	P	L	P	W	G	.	.	.	.	.	E	V	Y	G	G	L	Q	T	N	V	I	Q	G	Q	E	N	P	T	F	F	L	Y	S	T	K	I	Y	E	V	T	D	Y	I	T	Y	A	G	H	N	N	F	T	T
Template Known Secondary structure		.	.	.	.	.	.												T	S	.	.	.	.	.							G	G	.	.	.	.	.	G							T	T	S														T	T	G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.														.	.	.	.	.									.	.	.	.	.
Template SS confidence
								148	.	150	.	.	.	.	.	.	.	.	.	160						.	.	.	.	.	.	.	.						.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S	I	A	V	E
Query Conservation
Alig confidence				.	.
Template Conservation				.	.
Template Sequence		A	V	.	.	M	A	N	K	D	F	Y	D	G	L	S	A	E	D	Q	Q	L	V	Q	N	A	A	L	A	A	Y	D	H	T	V	V	Y	Q	Q	Q	A	A	D	T
Template Known Secondary structure				.	.										S																												T	T
Template Predicted Secondary structure				.	.
Template SS confidence
		212	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions