Job Description P33362 Confidence 92.34% Date Thu Jan 5 11:52:05 GMT 2012 Rank 54 Aligned Residues 256 % Identity 8% Template c3c9hB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens Resolution 1.90 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																												.																					.	.	.	.	.
Query SS confidence																																												.																					.	.	.	.	.
Query Sequence		S	L	V	M	L	A	A	V	S	L	P	L	Q	A	A	S	P	V	K	V	G	S	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	.	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	R	G	A	I	.	.	.	.	.	T	S	G	E	L	D	I	Y	P	E	Y	T
Query Conservation																																												.																					.	.	.	.	.
Alig confidence																																												.									.	.											.	.	.	.	.
Template Conservation																																																					.	.
Template Sequence		A	L	A	Q	V	A	V	F	P	A	L	S	G	K	T	D	A	Q	T	L	V	V	Y	S	S	L	D	E	P	L	A	T	P	M	I	E	G	F	Q	K	A	N	P	D	I	A	V	H	Y	E	D	.	.	M	L	T	G	E	I	Y	D	R	I	V	K	E	T	D	A	G	K	K	T	A	D	F	A	F	S	S
Template Known Secondary structure												T	T			T	T										S																	T	T								.	.																T	T			B		S					S
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		G	N	G	A	F	F	F	K	D	E	N	D	A	A	W	K	N	A	Q	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	.	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L
Query Conservation																																																															.
Alig confidence																																										.	.	.	.																		.
Template Conservation																																										.	.	.	.
Template Sequence		A	M	D	L	Q	V	K	L	S	N	D	G	Y	A	Q	R	S	D	L	A	M	S	A	R	W	P	A	W	A	N	W	R	N	T	A	Y	A	L	T	F	.	.	.	.	E	P	A	V	F	V	Y	H	K	P	S	F	T	T	E	K	P	P	A	T	R	A	E	F	V	D	Y	L	E	R	H	A	K	E	V	H
Template Known Secondary structure												T	T	S							T	T	G	G	G	S		G	G	G			T	T	T					B		.	.	.	.									G	G	G		S	S	S					S											T					T
Template Predicted Secondary structure																																										.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.														.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.
Query Sequence		A	A	S	A	E	F	I	E	R	A	D	A	L	P	A	F	E	K	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	P	V	A	.	.	.
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.																								.	.	.
Template Conservation																																																		.	.	.	.	.	.
Template Sequence		G	R	I	A	T	Y	D	I	E	R	S	G	V	G	F	L	F	M	S	R	D	Q	E	Q	F	G	D	I	W	S	V	I	K	A	M	G	A	A	G	V	K	V	Y	S	T	S	S	A	.	.	.	.	.	.	I	L	E	R	V	S	D	G	R	F	V	L	G	Y	N	I	L	G	S	Y	A	A	D	W	A	S
Template Known Secondary structure		T							T	T	T																T	T											T	T					S					.	.	.	.	.	.							T	T	S		S															T
Template Predicted Secondary structure																																																		.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.							.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
			227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	A	L	G	L	Q	T	L	S	D	P	Q	G	V	Q	P	I	Y	A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S
Query Conservation		.
Alig confidence		.																											.	.	.													.	.
Template Conservation																													.	.	.													.	.
Template Sequence		R	H	P	D	V	G	I	V	L	P	K	D	Y	T	V	V	M	S	R	I	G	L	V	P	E	A	A	.	.	.	A	N	P	E	L	G	R	R	Y	L	E	F	.	.	F	M	S	K	E	G	Q	T	I	M	A	R	Q
Template Known Secondary structure		T		T	T							S	S													T	T	B	.	.	.	S	S											.	.			S
Template Predicted Secondary structure																													.	.	.													.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.				.	.	.	.	.	.	.	.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions