Job Description P33362 Confidence 93.66% Date Thu Jan 5 11:52:05 GMT 2012 Rank 50 Aligned Residues 242 % Identity 17% Template c3b50A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac. Resolution 1.40 Å

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		23	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure											.	.	.																														.	.	.	.
Query SS confidence											.	.	.																														.	.	.	.
Query Sequence		A	A	S	P	V	K	V	G	S	.	.	.	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	.	.	.	.	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D
Query Conservation											.	.	.																														.	.	.	.
Alig confidence											.	.	.																														.	.	.	.
Template Conservation
Template Sequence		A	D	Y	D	L	K	F	G	M	N	A	G	T	S	S	N	E	Y	K	A	A	E	M	F	A	K	E	V	K	E	K	S	Q	G	K	I	E	I	S	L	Y	P	S	S	Q	L	G	D	D	R	A	M	L	K	Q	L	K	D	G	S	L	D	F	T	F	A	E	S	A	R	F	Q	L	F	Y	P	E	A	A	V
Template Known Secondary structure											S	S		T	T	S																	T	T	T	S								T	T	T	T													T	S								G	G	G	G	G	G	T	S	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		96	.	.	.					100	.	.	.	.	.	.	.	.										.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure						.	.	.	.										.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.										.	.	.	.	.	.	.	.	.
Query Sequence		A	A	W	K	.	.	.	.	N	A	Q	Q	G	Y	E	K	V	.	.	.	.	.	.	.	.	.	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L
Query Conservation						.	.	.	.										.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.										.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.																	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.																	.	.	.
Template Sequence		F	A	L	P	Y	V	I	S	N	Y	N	V	A	Q	K	A	L	F	D	T	E	F	G	K	D	L	I	K	K	M	D	K	D	L	G	V	T	L	L	S	Q	A	Y	N	G	T	R	Q	T	T	S	N	R	A	.	.	.	.	.	.	.	I	N	S	I	A	D	M	K	G	L	K	L	R	V	P	N	.	.	.
Template Known Secondary structure		G	G	S	T	T	T	S		S										S	S																																S	S		.	.	.	.	.	.	.			S	G	G	G	G	T	T							S	.	.	.
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.																	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.								.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		A	A	S	A	E	F	I	E	R	A	D	A	L	P	A	F	E	K	A	Y	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	P	V	A	A	L	G	.	.	L	Q	T	L	S	D	P	Q	G	V	Q
Query Conservation																																																																					.	.
Alig confidence		.	.	.	.	.	.	.	.	.														.	.	.	.	.									.	.	.	.	.																												.	.
Template Conservation		.	.	.	.	.	.	.	.	.														.	.	.	.	.									.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	A	A	T	N	L	A	Y	A	K	Y	V	G	A	.	.	.	.	.	S	P	T	P	M	A	F	S	.	.	.	.	.	E	V	Y	L	A	L	Q	T	N	A	V	D	G	Q	E	N	P	L	A	A	V	Q	A	Q	K	F	Y	E	V	Q	K	F	L	A	M	T	N	H	I	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.											T	T		.	.	.	.	.							G	G	.	.	.	.	.	G							T	T	S	S	S												T	T	G	G	G	S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.														.	.	.	.	.									.	.	.	.	.
Template SS confidence
											151	.	.	.	.	.	.	.	.	160	.	.	.						.	.	.	.	.	.	170	.						.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	Y	A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S	I	A	V	E	G	L	D	A	K	K	V	A	A	D	Y	L	K	Q	K	G
Query Conservation
Alig confidence							.	.																				.	.	.	.	.	.	.
Template Conservation							.	.																				.	.	.	.	.	.	.
Template Sequence		N	D	Q	L	Y	.	.	L	V	S	N	E	T	Y	K	E	L	P	E	D	L	Q	K	V	V	K	.	.	.	.	.	.	.	D	A	A	E	N	A	A	K	Y	H	T	K	L	F	V	D	G	E	K	D	L	V	T	F	F	E	K	Q	G
Template Known Secondary structure							.	.								T	T	S										.	.	.	.	.	.	.																												T	T
Template Predicted Secondary structure							.	.																				.	.	.	.	.	.	.
Template SS confidence
		212	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.								.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions