Job Description P33362 Confidence 93.82% Date Thu Jan 5 11:52:05 GMT 2012 Rank 48 Aligned Residues 240 % Identity 15% Template c2zzxD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:abc transporter, solute-binding protein; PDBTitle: crystal structure of a periplasmic substrate binding protein in2 complex with lactate Resolution 1.75 Å

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		26	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.					60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.									.	.	.	.	.	90
Predicted Secondary structure								.	.	.																													.	.	.	.																										.	.	.	.	.	.	.	.
Query SS confidence								.	.	.																													.	.	.	.																										.	.	.	.	.	.	.	.
Query Sequence		P	V	K	V	G	S	.	.	.	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	.	.	.	.	Q	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	.	.	.	.	.	.	.	.	N	G	A	F	F	F
Query Conservation								.	.	.																													.	.	.	.																										.	.	.	.	.	.	.	.
Alig confidence								.	.	.																													.	.	.	.																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	W	R	I	Q	T	A	W	D	A	G	T	V	G	Y	S	L	F	Q	K	F	T	E	R	V	K	E	L	T	D	G	Q	L	E	V	Q	P	F	P	A	G	A	V	V	G	T	F	D	M	F	D	A	V	K	T	G	V	L	D	G	M	N	P	F	T	L	Y	W	A	G	R	M	P	V	T	A	F	L	S	S
Template Known Secondary structure								S	S		T	T	S																	T	T	T	S								T	T	S	S	S		G	G	G								T	S	S	S					B	G	G	G	G	T	T	T		G	G	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		3035	.	.	.	.	3040	.	.	.	.	.	.	.	.	.	3050	.	.	.	.	.	.	.	.	.	3060	.	.	.	.	.	.	.	.	.	3070	.	.	.	.	.	.	.	.	.	3080	.	.	.	.	.	.	.	.	.	3090	.	.	.	.	.	.	.	.	.	3100	.	.	.	.	.	.	.	.	.	3110	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.						.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.
Query SS confidence																.	.	.	.	.
Query Sequence		K	D	E	N	D	A	A	W	K	N	A	Q	Q	G	.	.	.	.	.	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S
Query Conservation																.	.	.	.	.
Alig confidence																.	.	.	.	.																																	.	.	.	.	.	.	.																					.	.
Template Conservation																																																					.	.	.	.	.	.	.																					.	.
Template Sequence		Y	A	L	G	L	D	R	P	D	Q	W	E	T	W	F	Y	S	L	G	G	L	D	I	A	R	R	A	F	A	E	Q	G	L	F	Y	V	G	P	V	Q	H	D	L	N	I	I	H	S	K	K	P	.	.	.	.	.	.	.	I	R	R	F	E	D	F	K	G	V	K	L	R	V	P	G	G	M	I	A	.	.
Template Known Secondary structure			T	T	S			S										T	S	S											T	T	T																	S	S		.	.	.	.	.	.	.			S	G	G	G	G	T	T							S					.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.																					.	.
Template SS confidence
		3115	.	.	.	.	3120	.	.	.	.	.	.	.	.	.	3130	.	.	.	.	.	.	.	.	.	3140	.	.	.	.	.	.	.	.	.	3150	.	.	.	.	.	.	.	.	.	3160	.	.	.	.	.								.	.	.	.	3170	.	.	.	.	.	.	.	.	.	3180	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																												.	.							.
Query SS confidence																																																												.	.							.
Query Sequence		A	E	F	I	E	R	A	D	A	L	P	A	F	E	K	A	Y	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	.	.	P	V	A	A	L	G	.	L	Q	T	L	S	D	P	Q	G	V	Q	P	I
Query Conservation																																																												.	.							.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.									.	.	.	.	.																						.	.							.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.									.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	E	V	F	A	A	A	G	A	.	.	.	.	.	S	T	V	L	L	P	G	G	.	.	.	.	.	E	V	Y	P	A	L	E	R	G	V	I	D	A	A	D	F	V	G	P	A	V	N	Y	N	L	G	F	H	Q	V	A	K	Y	I	I	M	G	P	P	E	T	P	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.						T	T		.	.	.	.	.							G	G	.	.	.	.	.	G							T	T	S		S					S								T	T													T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.									.	.	.	.	.
Template SS confidence
													3186	.	.	.	3190	.	.	.						.	.	.	.	.	.	3200	.						.	.	.	.	.	.	.	.	3210	.	.	.	.	.	.	.	.	.	3220	.	.	.	.	.	.	.	.	.	3230	.	.	.	.	.	.	.	.	.	3240	.	.	.	.
		243	.						.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure				.	.	.	.	.
Query SS confidence				.	.	.	.	.
Query Sequence		Y	A	.	.	.	.	.	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S	I	A	V	E	G	L	D	A	K	K	V	A	A	D	Y	L	K	Q	K	G
Query Conservation				.	.	.	.	.
Alig confidence				.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.
Template Sequence		I	H	Q	P	V	D	L	M	D	F	T	I	N	L	N	R	W	R	S	L	P	K	P	L	Q	E	R	F	I	.	.	.	.	.	.	.	A	A	V	H	E	Y	S	W	I	H	Y	A	G	I	Q	K	A	N	L	E	A	W	P	K	Y	R	Q	A	G
Template Known Secondary structure		S	S		S	S															S										.	.	.	.	.	.	.																												T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.
Template SS confidence
		3245	.	.	.	.	3250	.	.	.	.	.	.	.	.	.	3260	.	.	.	.	.	.	.	.	.	3270	.	.	.								.	.	.	.	.	.	3280	.	.	.	.	.	.	.	.	.	3290	.	.	.	.	.	.	.	.	.	3300	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions