Job Description P33362 Confidence 20.67% Date Thu Jan 5 11:52:05 GMT 2012 Rank 169 Aligned Residues 165 % Identity 10% Template c2z8fB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:galacto-n-biose/lacto-n-biose i transporter substrate- PDBTitle: the galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the2 abc transporter from bifidobacterium longum in complex with lacto-n-3 tetraose Resolution 1.65 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.					.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																.	.	.	.																		.														.	.	.	.													.
Query SS confidence																.	.	.	.																		.														.	.	.	.													.
Query Sequence		L	Q	A	A	S	P	V	K	V	G	S	K	I	D	.	.	.	.	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	.	G	V	P	T	V	N	K	V	Q	L	G	T	T	.	.	.	.	P	V	V	R	G	A	I	T	S	G	E	L	.	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F
Query Conservation																.	.	.	.																		.														.	.	.	.													.
Alig confidence																.	.	.	.																		.														.	.	.	.													.
Template Conservation
Template Sequence		T	D	D	G	G	V	V	N	I	T	Y	M	H	R	L	P	D	S	E	G	M	T	L	V	N	D	I	V	A	K	W	N	K	Q	H	P	D	I	Q	V	K	A	T	K	F	D	G	K	A	S	D	M	I	K	K	L	E	T	D	V	K	S	G	E	A	P	D	L	A	Q	V	G	Y	A	E	L	P	E	V	F
Template Known Secondary structure						S														T	T	S															T	T									S	S		G	G	G												T				S						T	T	T
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																	.	.	.	.																																									.	.	.	.
Query SS confidence																	.	.	.	.																																									.	.	.	.
Query Sequence		K	D	E	N	D	A	A	W	K	N	A	Q	Q	G	Y	.	.	.	.	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	.	.	.	.	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L
Query Conservation																	.	.	.	.																																									.	.	.	.
Alig confidence																	.	.	.	.																							.																		.	.	.	.
Template Conservation																																											.
Template Sequence		T	K	G	L	L	Q	D	V	T	Q	Y	A	E	Q	Y	K	N	D	F	A	S	G	P	Y	S	L	V	Q	V	G	G	K	A	Y	G	L	P	Q	D	T	G	.	P	L	V	Y	F	Y	N	K	A	E	F	E	K	L	G	I	T	E	I	P	Q	T	A	D	E	F	I	A	A	A	K	T	A	A	A	A	G	K
Template Known Secondary structure			T	T		B											G	G	G	B							T	T			T	T											.	B													T	T			S				B														T	T
Template Predicted Secondary structure																																											.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	S	A	E	F	I	E	R	A	D	A	L	P	A	F	E	K	A	Y	G	F	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	I	M	S	Y	Q	P	D	E	A	G	N	M	I	S	G	L	A	G	A	S	G	G	W
Template Known Secondary structure		B	S		B			G	G	G	T	T	T								T	T			S
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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