Job Description P33362 Confidence 96.53% Date Thu Jan 5 11:52:05 GMT 2012 Rank 40 Aligned Residues 240 % Identity 13% Template c2vpnB_ PDB info PDB header:transport Chain: B: PDB Molecule:periplasmic substrate binding protein; PDBTitle: high-resolution structure of the periplasmic ectoine-2 binding protein from teaabc trap-transporter of halomonas3 elongata Resolution 1.55 Å

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		25	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.											80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.																														.	.																				.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.																														.	.																				.	.	.	.	.	.	.	.	.	.
Query Sequence		S	P	V	K	V	G	S	.	.	.	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	.	.	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	.	.	.	.	.	.	.	.	.	.	P	E	Y	T	G	N	G	A	F	F
Query Conservation									.	.	.																														.	.																				.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.																														.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	N	W	R	Y	A	H	E	E	Y	E	G	D	V	Q	D	V	F	A	Q	A	F	K	G	Y	V	E	D	N	S	D	H	T	V	Q	V	Y	R	F	G	E	L	G	E	S	D	D	I	M	E	Q	T	Q	N	G	I	L	Q	F	V	N	Q	S	P	G	F	T	G	S	L	I	P	S	A	Q	I	F	F	I	P
Template Known Secondary structure									S	S		T	T	S																	S	S								T	T	S	S		S										T	T	S		S										T	T	T	S	G	G	G	G	G	G	G	S	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		90	.	.	.	.	.					.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		F	K	D	E	N	D	.	.	.	.	A	A	W	K	N	A	Q	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.																																										.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Sequence		Y	L	M	P	T	D	M	D	T	V	L	E	F	F	D	E	S	K	A	I	N	E	M	F	P	K	L	Y	A	E	H	G	L	E	L	L	K	M	Y	P	E	G	E	M	V	V	T	A	D	E	P	.	.	.	.	.	.	.	I	T	S	P	E	D	F	D	N	K	K	I	R	T	M	T	.	.	.	.	.	.
Template Known Secondary structure		T		S		S	S																T								T	T	T																	S	S		.	.	.	.	.	.	.			S	G	G	G	G	T	T							S	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.																	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.								.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		A	E	F	I	E	R	A	D	A	L	P	A	F	E	K	A	Y	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	P	V	A	A	L	G	.	.	L	Q	T	L	S	D	P	Q	G	V	Q	P	I	Y
Query Conservation																																																																		.	.
Alig confidence		.	.	.	.	.	.														.	.	.	.	.									.	.	.	.	.																												.	.
Template Conservation		.	.	.	.	.	.														.	.	.	.	.									.	.	.	.	.
Template Sequence		.	.	.	.	.	.	N	P	L	L	A	E	T	Y	K	A	F	G	A	.	.	.	.	.	T	P	T	P	L	P	W	G	.	.	.	.	.	E	V	Y	G	G	L	Q	T	G	I	I	D	G	Q	E	N	P	I	F	W	I	E	S	G	G	L	Y	E	V	S	P	N	L	T	F	T	S	H	G	W	F	T	T
Template Known Secondary structure		.	.	.	.	.	.												T		.	.	.	.	.							G	G	.	.	.	.	.	G								T	S		S												T	T	G	G	G	T
Template Predicted Secondary structure		.	.	.	.	.	.														.	.	.	.	.									.	.	.	.	.
Template SS confidence
								148	.	150	.	.	.	.	.	.	.	.	.	160						.	.	.	.	.	.	.	.						.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S	I	A	V	E	G	L	D	A	K	K	V	A	A	D	Y	L	K	Q	K	G
Query Conservation
Alig confidence				.	.																				.	.	.	.	.	.	.
Template Conservation				.	.																				.	.	.	.	.	.	.
Template Sequence		A	M	.	.	M	A	N	Q	D	F	Y	E	G	L	S	E	E	D	Q	Q	L	V	Q	.	.	.	.	.	.	.	D	A	A	D	A	A	Y	D	H	T	I	E	H	I	K	G	L	S	E	E	S	L	E	K	I	K	A	A	S
Template Known Secondary structure				.	.										S										.	.	.	.	.	.	.															T	T
Template Predicted Secondary structure				.	.																				.	.	.	.	.	.	.
Template SS confidence
		212	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.								.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions