Job Description P33362 Confidence 22.86% Date Thu Jan 5 11:52:05 GMT 2012 Rank 163 Aligned Residues 239 % Identity 9% Template c2qryD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:thiamine-binding periplasmic protein; PDBTitle: periplasmic thiamin binding protein Resolution 2.25 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.					.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.					.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.																																		.	.	.	.
Query SS confidence																	.	.	.	.																																		.	.	.	.
Query Sequence		A	S	P	V	K	V	G	S	K	I	D	T	E	G	A	.	.	.	.	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	R	G	A	I	.	.	.	.	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D
Query Conservation																	.	.	.	.																																		.	.	.	.
Alig confidence										.	.						.	.	.	.																						.												.	.	.	.
Template Conservation										.	.																															.
Template Sequence		K	P	V	L	T	V	Y	T	.	.	Y	D	S	F	A	A	D	W	G	P	G	P	V	V	K	K	A	F	E	A	D	C	N	C	E	L	K	L	V	A	.	L	E	D	G	V	S	L	L	N	R	L	R	X	E	G	K	N	S	K	A	D	V	V	L	G	L	D	N	N	L	L	D	A	A	S	K	T	G	L
Template Known Secondary structure										.	.						S	T	T	S	S											S	S		S							.		S													G	G	G				S							G	G	G						T	T	T
Template Predicted Secondary structure										.	.																															.
Template SS confidence
		19	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		A	A	W	K	N	A	Q	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																													.	.	.	.	.																.																													.	.	.	.
Template Conservation																													.	.	.	.	.																.
Template Sequence		F	A	K	S	G	V	A	A	D	A	V	N	V	P	G	G	W	N	N	D	T	F	V	P	F	D	Y	.	.	.	.	.	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	P	.	P	Q	S	L	K	E	L	V	E	S	D	Q	N	W	R	V	I	Y	Q	D	P	R	T	S	T	P	G	L	G	L	L	L
Template Known Secondary structure		B							T	T	S				T	T					S	S							.	.	.	.	.									T	T	T		S	S		.		S	S								S	S									T	T	T
Template Predicted Secondary structure																													.	.	.	.	.																.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.						.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
						172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.						.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure		.	.	.	.																																																							.	.	.	.	.
Query SS confidence		.	.	.	.																																																							.	.	.	.	.
Query Sequence		.	.	.	.	A	D	A	L	P	A	F	E	K	A	Y	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	P	V	.	.	.	.	.	A	A	L	G	L	Q	T	L	S	D	P	Q	G	V	Q	P	I
Query Conservation		.	.	.	.																																																							.	.	.	.	.
Alig confidence		.	.	.	.																											.	.	.	.	.	.																							.	.	.	.	.
Template Conservation																																.	.	.	.	.	.
Template Sequence		W	X	Q	K	V	Y	G	D	D	A	P	Q	A	W	Q	K	L	A	K	K	T	V	T	V	T	K	G	W	S	E	.	.	.	.	.	.	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T	S	P	A	Y	H	I	L	E	E	K	K	D	N	Y	A	A	A	N	F	S	E	G	H	Y	L	Q
Template Known Secondary structure								G	G	G										T	T						S	S				.	.	.	.	.	.							T	T	S		S						T	T																				T	T
Template Predicted Secondary structure																																.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.							200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S
Query Conservation
Alig confidence																.	.										.	.	.
Template Conservation																.	.										.	.	.
Template Sequence		V	E	V	A	A	R	T	A	A	S	K	Q	P	E	.	.	L	A	Q	K	F	L	Q	F	X	.	.	.	V	S	P	A	F	Q	N	A	I	P	T	G
Template Known Secondary structure								B	T	T		S				.	.										.	.	.	T	S					T	T
Template Predicted Secondary structure																.	.										.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.				.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions