Job Description P33362 Confidence 93.02% Date Thu Jan 5 11:52:05 GMT 2012 Rank 53 Aligned Residues 169 % Identity 15% Template c2qpqC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis Resolution 1.92 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																											.																.
Query SS confidence																											.																.
Query Sequence		P	V	K	V	G	S	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	.	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	.	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A	W	K	N	A	Q	Q
Query Conservation																											.																.
Alig confidence																											.																.																																			.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		D	I	I	V	T	F	P	P	G	G	G	T	D	M	L	A	R	L	I	G	N	Y	L	T	E	S	L	G	Q	T	A	V	V	E	N	R	P	G	A	S	G	N	V	G	A	R	L	V	A	D	R	A	P	D	G	Y	S	L	L	M	V	N	S	S	F	A	V	N	P	G	V	F	R	N	L	P	.	.	.	.
Template Known Secondary structure						S	S		T	T	S															T	T	S	S	S										G	G	G									T	S		S	S	S	S							T										S	S		S	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	.	D	A	L	P	A	F	E	K	A	Y
Query Conservation																																																																							.
Alig confidence		.	.	.	.	.	.	.	.													.																.	.	.	.																														.
Template Conservation		.	.	.	.	.	.	.	.													.																.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	F	D	P	K	K	D	F	A	A	V	I	N	.	V	A	Y	V	P	S	V	F	V	V	P	A	G	S	K	.	.	.	.	Y	K	T	L	G	E	L	M	A	A	A	K	Q	T	N	T	Q	V	T	Y	G	S	C	G	N	G	T	P	Q	H	L	A	G	E	L	L	N	V	S	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	S		T	T	T	S							.												T	T		S	.	.	.	.			S								T		S	S	S								S	S	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.													.																.	.	.	.
Template SS confidence
										87	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.					.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A
Query Conservation
Alig confidence									.										.	.	.	.	.	.
Template Conservation									.										.	.	.	.	.	.
Template Sequence		K	T	H	M	V	H	V	.	P	Y	K	G	C	G	P	A	L	.	.	.	.	.	.	N	D	V	L	G	S	Q	I	G	L	A	V	V
Template Known Secondary structure		T							.			S	S						.	.	.	.	.	.					T	T	S	S	S
Template Predicted Secondary structure									.										.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.							170	.	.	.	.	.	.	.	.	.	180	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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