Job Description P33362 Confidence 96.40% Date Thu Jan 5 11:52:05 GMT 2012 Rank 41 Aligned Residues 232 % Identity 17% Template c2pfzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp6, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid Resolution 1.80 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.											.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	.	.	.	.	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	.	.	.	.	.	.	.	.	.	.	F	F	F	K	D	E	N	D	A	A
Query Conservation																																			.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	N	L	H	V	E	N	L	T	Q	F	V	K	D	V	D	S	L	S	G	G	K	L	K	I	T	L	H	N	N	A	S	L	Y	K	A	P	E	I	K	R	A	V	Q	G	N	Q	A	Q	I	G	E	I	L	L	T	N	F	A	N	E	D	P	V	Y	E	L	D	G	L	P	F	L	A	T	G	Y	D	A
Template Known Secondary structure		T	T	S																		T	T	S								T	T	S	S	S		G	G	G							T	T	S	S	S						G	G	G	G	T	T	T		G	G	G	T	G	G	G	S	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	K	N	A	Q	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	P	A
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	F	K	L	Y	Q	A	Q	K	P	F	L	E	K	K	L	A	S	Q	G	M	M	L	L	Y	S	V	A	W	P	P	Q	G	I	F	A	N	R	D	.	.	.	.	.	.	.	I	K	Q	V	S	D	M	K	G	L	K	W	R	A	Y	S	P	V	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	K
Template Known Secondary structure																			T	T	T																	S	S		.	.	.	.	.	.	.		S	S	G	G	G	G	T	T						S	S					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130								.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150														.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		F	E	K	A	Y	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	P	V	A	A	L	G	.	.	L	Q	T	L	S	D	P	Q	G	V	Q	P	I	Y	A	P	A	P	V	V	R	E	S	V	L	R
Query Conservation																																																						.	.
Alig confidence									.	.	.	.	.									.	.	.	.	.																												.	.																	.	.
Template Conservation									.	.	.	.	.									.	.	.	.	.																																														.	.
Template Sequence		I	A	E	L	V	G	A	.	.	.	.	.	Q	P	V	T	V	Q	Q	A	.	.	.	.	.	E	L	A	Q	A	M	A	T	G	V	I	D	S	Y	M	S	S	G	S	T	G	F	D	T	K	T	Y	E	Y	I	K	K	F	Y	D	T	E	A	W	L	P	K	N	A	V	.	.	L	V	N	K	K	A	F	D
Template Known Secondary structure							T		.	.	.	.	.							G	G	.	.	.	.	.	G							T	T	S		S												T	T	G	G	G	T																	.	.
Template Predicted Secondary structure									.	.	.	.	.									.	.	.	.	.																																														.	.
Template SS confidence
		152	.	.	.	.	.	.						.	160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S	I	A	V	E	G	L	D	A	K	K	V	A	A	D	Y	L	K	Q	K	G
Query Conservation
Alig confidence													.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.
Template Sequence		A	L	D	P	A	T	Q	Q	A	L	K	.	.	.	.	.	.	.	K	A	G	A	Q	A	E	E	R	G	W	K	L	S	Q	E	K	N	S	W	Y	K	E	Q	L	A	K	N	G
Template Known Secondary structure		T	S										.	.	.	.	.	.	.																												T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230								.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions