Job Description P33362 Confidence 63.40% Date Thu Jan 5 11:52:05 GMT 2012 Rank 97 Aligned Residues 189 % Identity 12% Template c2o1mB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable amino-acid abc transporter PDBTitle: crystal structure of the probable amino-acid abc2 transporter extracellular-binding protein ytmk from3 bacillus subtilis. northeast structural genomics4 consortium target sr572 Resolution 2.00 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		L	L	G	N	I	I	L	Q	V	L	E	S	H	.	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A	W	K	N	A	Q	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K
Query Conservation															.
Alig confidence															.									.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	D	V	E	L	I	K	E	L	D	K	R	L	P	H	Y	K	F	T	F	K	T	.	.	X	E	F	S	N	L	L	V	S	L	G	Q	H	K	V	D	I	V	A	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	X	E	K	S	K	E	R	E	K
Template Known Secondary structure															T	T								.	.			G	G	G						G	G	G	S		S				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.																											.	.	.	.	.	.	.	90	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	P	A	F	E	K	A	Y	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G
Query Conservation
Alig confidence																										.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	F	L	F	N	K	V	A	Y	N	H	F	P	L	K	I	T	V	L	Q	N	N	D	T	.	.	I	R	G	I	E	D	L	K	G	K	R	V	I	T	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	L	V	L	K	K	W	N	E	D	N	G	R	P	F	E	I	A	Y	E	A	N	E
Template Known Secondary structure							S	S													T	T			S	.	.		S	S	G	G	G		T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	T	T			S
Template Predicted Secondary structure																										.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.															.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																										.	.																																																						.
Query SS confidence																										.	.																																																						.
Query Sequence		D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	.	.	D	G	P	V	A	A	L	G	L	Q	T	L	S	D	P	Q	G	V	Q	P	I	Y	A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	.
Query Conservation																										.	.																																																						.
Alig confidence				.	.	.	.	.	.																	.	.																								.								.	.	.	.																			.
Template Conservation				.	.	.	.	.	.																																										.								.	.	.	.
Template Sequence		T	A	.	.	.	.	.	.	N	Q	L	K	S	G	R	A	D	A	T	I	S	T	P	F	A	V	D	F	Q	N	K	T	S	T	I	K	E	K	T	V	G	N	V	L	S	N	A	K	V	.	Y	F	X	F	N	K	N	.	.	.	.	E	Q	T	L	S	D	D	I	D	K	A	L	Q	E	I	I	D	D	G
Template Known Secondary structure				.	.	.	.	.	.						S	S		S																	S	S															.						G	G	.	.	.	.	G																	T	T
Template Predicted Secondary structure				.	.	.	.	.	.																																										.								.	.	.	.
Template SS confidence
		163	.							.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.					.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		275	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	Q	Q	L	N	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	K	R	L	S	L	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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