Job Description P33362 Confidence 98.90% Date Thu Jan 5 11:52:05 GMT 2012 Rank 25 Aligned Residues 253 % Identity 12% Template c2i4cA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																						.																	.
Query SS confidence																						.																	.
Query Sequence		L	P	L	Q	A	A	S	P	V	K	V	G	S	K	I	D	T	E	G	A	.	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	.	T	V	N	K	V	Q	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A
Query Conservation																						.																	.
Alig confidence																						.																	.							.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	M	M	P	E	T	A	N	I	K	L	G	Y	I	P	I	V	E	A	A	P	L	I	I	A	Q	E	K	G	F	F	A	K	Y	G	M	T	G	V	E	V	S	K	Q	.	A	N	W	A	S	A	R	D	N	V	T	I	G	S	Q	G	G	G	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G
Template Known Secondary structure			S	S		S		S								S	S	G	G	G									T	T					T	T		T								.	S	S												T	T	T	T	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.														.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.											.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.
Query Sequence		A	W	K	N	A	Q	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	.	.	.	.	.	.	.	.	.	.	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A
Query Conservation																																										.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.
Template Sequence		Q	W	Q	M	P	M	P	H	L	I	T	E	G	I	I	T	N	G	N	K	V	P	M	Y	V	L	A	Q	L	I	T	Q	G	N	G	I	A	V	A	P	M	H	E	G	K	G	V	N	L	D	I	T	K	A	A	D	Y	I	K	G	F	N	K	T	N	G	R	.	.	.	.	.	K	F	K	A	A	H	T	F
Template Known Secondary structure					T	T							T	T	T	T	T	T	T													B									G	G	G	T	T	T	T		S	S			G	G	G						T						S	S	.	.	.	.	.							S	S
Template Predicted Secondary structure																																																																					.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																								.																																				.	.
Query SS confidence																								.																																				.	.
Query Sequence		E	F	I	E	R	A	D	A	L	P	A	F	E	K	A	Y	G	F	K	L	G	Q	.	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	.	.	P	V	A	A	L	G	L	Q	T	L	S	D	P	Q	G	V	Q	P	I	Y
Query Conservation																								.																																				.	.
Alig confidence																								.										.	.	.	.	.																						.	.
Template Conservation																																		.	.	.	.	.
Template Sequence		P	N	V	N	Q	D	F	W	I	R	Y	W	F	A	A	G	G	V	D	P	D	T	D	I	D	L	L	A	V	P	P	A	.	.	.	.	.	E	T	V	Q	G	M	R	N	G	T	M	D	A	F	S	T	G	D	P	W	P	Y	R	I	V	T	E	N	I	G	Y	M	A	G	L	T	A	Q	I	W	P	Y	H
Template Known Secondary structure		T	T	S													T	T			T	T	T	T	S									.	.	.	.	.									T									T	T								T	T	S											S	T	T
Template Predicted Secondary structure																																		.	.	.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.						.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		244	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		A	P	A	P	V	V	.	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S	I	A	V	E	G	L	D	A	K	K	V	A	A	D	Y	L	K	Q	K	G	W	T	K
Query Conservation								.
Alig confidence								.																			.	.	.	.	.	.	.	.													.								.
Template Conservation																											.	.	.	.	.	.	.	.													.								.
Template Sequence		P	E	E	Y	L	A	I	R	A	D	W	V	D	K	N	P	K	A	T	K	A	L	L	K	G	.	.	.	.	.	.	.	.	I	M	E	A	Q	Q	W	I	D	D	P	K	.	N	R	P	E	V	V	Q	.	I	V	S	G	R	N	Y	F	N
Template Known Secondary structure																											.	.	.	.	.	.	.	.										S	G	G	.	G							.				S	T	T	T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.													.								.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.									.	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions