Job Description P33362 Confidence 86.15% Date Thu Jan 5 11:52:05 GMT 2012 Rank 66 Aligned Residues 229 % Identity 13% Template c2hzkB_ PDB info PDB header:ligand binding, transport protein Chain: B: PDB Molecule:trap-t family sorbitol/mannitol transporter, periplasmic PDBTitle: crystal structures of a sodium-alpha-keto acid binding subunit from a2 trap transporter in its open form Resolution 1.70 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.						.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.																								.	.	.	.	.
Query SS confidence																														.	.	.	.																								.	.	.	.	.
Query Sequence		G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	.	.	.	.	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	.	.	.	.	.	F	F	F	K	D	E	N	D	A	A	W	K	N	A	Q	Q	G	Y	E	K
Query Conservation																														.	.	.	.																								.	.	.	.	.
Alig confidence																														.	.	.	.																								.	.	.	.	.
Template Conservation
Template Sequence		F	G	G	A	E	V	L	S	K	X	L	S	E	A	T	D	G	N	F	Q	I	Q	V	F	S	A	G	E	L	V	P	G	L	Q	A	A	D	A	V	T	E	G	T	V	E	C	C	H	T	V	G	Y	Y	Y	W	G	K	D	P	T	F	A	L	A	A	A	V	P	F	S	L	S	A	R	G	I	N	A	W	H
Template Known Secondary structure															T	T	T	T									T	T	S	S	S		G	G	G							T	T	S	S	S						G	G	G	G	T	T	T		T					T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		108	.								110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure				.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.
Query Sequence		V	K	.	.	.	.	.	.	.	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	P	A	F	E	K
Query Conservation				.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.																													.	.	.	.	.	.										.	.	.	.	.	.	.									.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.										.	.	.	.	.	.	.									.	.	.	.	.	.	.
Template Sequence		Y	H	G	G	G	I	D	L	Y	N	E	F	L	S	Q	H	N	I	V	A	F	P	G	G	N	T	G	V	Q	X	G	G	W	F	R	R	E	.	.	.	.	.	.	I	N	T	V	A	D	X	Q	G	.	.	.	.	.	.	.	L	K	X	R	V	G	G	F	.	.	.	.	.	.	.	A	G	K	V	X	E
Template Known Secondary structure				S	S										G	G	G	T											S	B						S	S		.	.	.	.	.	.			S	S	G	G	G	T	T	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.										.	.	.	.	.	.	.									.	.	.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.							.	.	.	.	.	170	.	.	.								.	.	.	.	.	.	180	.								.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.		220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																						.				.											.
Query SS confidence																																						.				.											.
Query Sequence		A	Y	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	.	M	A	Y	.	G	T	D	G	P	V	A	A	L	G	.	L	Q	T	L	S	D	P	Q	G	V	Q	P	I	Y	A	P	A	P	V	V	R	E	S	V	L	R	E	Y
Query Conservation																																						.				.											.
Alig confidence						.	.	.	.	.									.	.	.	.	.															.				.											.
Template Conservation						.	.	.	.	.									.	.	.	.	.
Template Sequence		R	L	G	V	.	.	.	.	.	V	P	Q	Q	I	A	G	G	.	.	.	.	.	D	I	Y	P	A	L	E	K	G	T	I	D	A	T	E	W	V	G	P	Y	D	D	E	K	L	G	F	F	K	V	A	P	Y	Y	Y	Y	P	G	W	W	E	G	G	P	T	V	H	F	X	F	N	K	S	A	Y	E	G	L
Template Known Secondary structure		T	T	T		.	.	.	.	.							G	G	.	.	.	.	.	G								T	S		S												T	T	T	G	G	G	T								B	T	T		S	S															S
Template Predicted Secondary structure						.	.	.	.	.									.	.	.	.	.
Template SS confidence
		188	.	190	.						.	.	.	.	.	.	.	.						200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S	I	A	V	E	G	L	D	A	K	K	V	A	A	D	Y	L	K	Q	K	G
Query Conservation
Alig confidence											.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.
Template Sequence		T	P	T	Y	Q	S	L	L	R	.	.	.	.	.	.	.	T	A	C	H	A	A	D	A	N	X	L	Q	L	Y	D	W	K	N	P	T	A	I	K	S	L	V	A	Q	G
Template Known Secondary structure											.	.	.	.	.	.	.																												T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.								.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions