Job Description P33362 Confidence 96.61% Date Thu Jan 5 11:52:05 GMT 2012 Rank 38 Aligned Residues 246 % Identity 16% Template c2hpgB_ PDB info PDB header:ligand binding protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding PDBTitle: the crystal structure of a thermophilic trap periplasmic2 binding protein Resolution 1.90 Å

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		22	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.					60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure												.	.	.																													.	.	.	.
Query SS confidence												.	.	.																													.	.	.	.
Query Sequence		Q	A	A	S	P	V	K	V	G	S	.	.	.	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	.	.	.	.	Q	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N
Query Conservation												.	.	.																													.	.	.	.
Alig confidence												.	.	.																													.	.	.	.
Template Conservation
Template Sequence		G	A	K	Y	T	L	R	F	G	H	V	L	A	P	G	E	P	Y	H	Q	A	F	L	K	W	A	K	A	V	E	E	K	T	N	G	D	V	R	I	E	V	F	P	S	S	Q	L	G	V	E	E	D	I	I	E	Q	I	R	X	G	A	P	V	G	W	N	T	D	S	A	R	L	G	X	Y	V	K	D	I	G
Template Known Secondary structure				S											T	T	S	T																T	T	T	S											T	T	T										T	T		S											T	T	T	S	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		95	.	.	.	.	100	.	.																						.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	A	W	K	N	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.
Template Sequence		V	X	N	L	A	Y	F	I	D	F	X	G	A	K	T	P	E	E	A	I	E	V	L	K	K	I	K	Q	S	P	T	X	Q	K	W	L	K	E	L	E	Q	R	F	G	I	K	V	L	S	F	Y	W	V	Q	G	Y	R	H	F	V	T	N	K	P	.	.	.	.	.	.	I	R	K	P	E	D	L	N	G	L
Template Known Secondary structure		G	G	G	S	T	T					T	T			S														S																																	S	S		.	.	.	.	.	.			S	G	G	G	G	T	T
Template Predicted Secondary structure																																																																		.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.							.	.	.	.	.	170	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	P	A	F	E	K	A	Y	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	G	P	V	A	A	L	G	.	.	L	Q
Query Conservation																																																																														.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.									.	.	.	.	.																												.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.									.	.	.	.	.
Template Sequence		R	I	R	T	P	G	.	.	.	.	.	.	.	.	.	.	.	.	A	P	A	W	Q	E	S	I	R	S	L	G	A	.	.	.	.	.	I	P	V	A	V	N	F	G	.	.	.	.	.	E	I	Y	T	A	V	Q	T	R	A	V	D	G	A	E	L	T	Y	A	N	V	Y	N	G	G	L	Y	E	V	L	K
Template Known Secondary structure							S	.	.	.	.	.	.	.	.	.	.	.	.	S											T		.	.	.	.	.							G	G	.	.	.	.	.	G							T	T	S		S												T	T	G	G	G	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.									.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180													.	.	.	.	.	.	.	.	.	190	.	.	.						.	.	.	.	.	.	200	.						.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	S	D	P	Q	G	V	Q	P	I	Y	A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S	I	A	V	E	G	L	D	A	K	K	V	A	A	D	Y	L	K	Q	K	G	W
Query Conservation
Alig confidence																.	.																					.	.	.																		.	.	.
Template Conservation																.	.																					.	.	.																		.	.	.
Template Sequence		Y	X	S	E	T	G	H	F	L	L	I	N	F	E	.	.	I	V	S	A	D	W	F	N	S	L	P	K	E	Y	Q	K	I	I	E	E	.	.	.	E	X	D	K	A	G	I	E	V	S	L	K	I	X	K	E	L	.	.	.	E	E	E	Y	K	Q	K	C	I	E	K	G	X
Template Known Secondary structure																.	.										S											.	.	.																T		.	.	.											T	T
Template Predicted Secondary structure																.	.																					.	.	.																		.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.				.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.				.	.	.	.	.	.	290	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions