Job Description P33362 Confidence 99.07% Date Thu Jan 5 11:52:05 GMT 2012 Rank 19 Aligned Residues 253 % Identity 13% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																													.	.								.														.	.	.
Query SS confidence																													.	.								.														.	.	.
Query Sequence		P	L	Q	A	A	S	P	V	K	V	G	S	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	.	.	V	L	E	S	H	G	V	.	P	T	V	N	K	V	Q	L	G	T	T	P	V	.	.	.	V	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E
Query Conservation																													.	.								.														.	.	.
Alig confidence																							.						.	.								.														.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	P	E	V	T	T	A	K	L	G	F	I	A	L	T	D	A	A	P	L	.	I	I	A	K	E	K	G	F	Y	A	K	Y	G	M	P	D	V	E	V	L	K	Q	A	S	W	G	T	T	R	D	N	L	V	L	G	S	A	S	G	G	I	D	G	A	H	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S		S								S	S	G	G	G				.						T	T					T	T		T	T							S													G	G	G	T	S		S				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	A	A	W	K	N	A	Q	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	I	L	T	P	M	P	Y	L	I	T	M	G	T	V	T	D	G	K	P	T	P	M	Y	I	L	A	R	L	N	V	N	G	Q	G	I	Q	L	G	N	N	Y	K	D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V	T	D	P	K	V	A	M	T	F	P	G	G	T	H	D	M
Template Known Secondary structure		.	.	.	.			T										T	T	S	S	S													B	S								G	G	G	G	G	G				S			T	T							T	S	S	S						S	S	T	T	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.																																						.	.																												.
Query SS confidence														.																																						.	.																												.
Query Sequence		A	L	P	A	F	E	K	A	Y	G	F	K	.	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	D	.	.	G	P	V	A	A	L	G	L	Q	T	L	S	D	P	Q	G	V	Q	P	I	Y	A	P	A	P	V	V	.
Query Conservation														.																																						.	.																												.
Alig confidence														.																.	.	.	.	.																		.	.																												.
Template Conservation																														.	.	.	.	.
Template Sequence		W	I	R	Y	W	L	A	A	G	G	M	E	P	G	K	D	F	S	T	I	V	V	P	P	A	Q	M	V	.	.	.	.	.	A	N	V	K	V	N	A	M	E	S	F	C	V	G	E	P	W	P	L	Q	T	V	N	Q	G	V	G	Y	Q	A	L	T	T	G	Q	L	W	K	D	H	P	E	K	A	F	G	M
Template Known Secondary structure										T	T			B	T	T	T	B							G	G	G			.	.	.	.	.					T	T	S		S						T	T									T	S							G	G	G	T	B	T	T		B
Template Predicted Secondary structure																														.	.	.	.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.						.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S	I	A	V	E	G	L	D	A	K	K	V	A	A	D	Y	L	K	Q	K	G	W	T	K
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.													.								.
Template Conservation																				.	.	.	.	.	.	.	.													.								.
Template Sequence		R	A	D	W	V	D	Q	N	P	K	A	A	K	A	L	L	M	A	.	.	.	.	.	.	.	.	V	M	E	A	Q	Q	W	C	D	Q	A	E	.	N	K	E	E	M	C	Q	.	I	L	S	K	R	E	W	F	K
Template Known Secondary structure																				.	.	.	.	.	.	.	.											G	G	.	G							.				S	T	T	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.													.								.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.									.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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