Job Description P33362 Confidence 96.32% Date Thu Jan 5 11:52:05 GMT 2012 Rank 42 Aligned Residues 250 % Identity 14% Template c2f5xC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:bugd; PDBTitle: structure of periplasmic binding protein bugd Resolution 1.72 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																											.																		.
Query SS confidence																											.																		.
Query Sequence		P	V	K	V	G	S	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	.	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	.	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A	W	K	N	A	Q	Q
Query Conservation																											.																		.
Alig confidence																											.																		.																																	.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		N	X	V	V	P	F	A	A	G	G	P	T	D	N	V	A	R	S	L	A	E	S	X	R	P	T	L	G	E	T	V	V	V	E	N	K	G	G	A	G	G	T	I	G	T	T	Q	V	A	R	A	Q	P	D	G	Y	S	I	L	L	X	H	A	G	F	S	T	A	P	S	L	Y	K	N	P	G	.	.	.	.
Template Known Secondary structure						S	S		T	T	S																		S	S										G	G	G									T	S		S	S	S	S							T					G	G	G	T		S			S	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	.	D	A	L	P	A	F	E	K	A	Y
Query Conservation																																																																							.
Alig confidence		.	.	.	.	.	.	.	.												.																	.	.	.	.																														.
Template Conservation		.	.	.	.	.	.	.	.												.																	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	Y	E	P	Y	T	S	F	E	P	I	G	.	L	V	V	D	V	P	X	T	I	I	A	R	G	D	F	P	.	.	.	.	P	N	N	I	K	E	L	A	E	Y	V	K	K	N	A	D	K	I	S	L	A	N	A	G	I	G	A	A	S	H	L	C	G	T	X	L	V	E	A	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	S		T	T	T	S						.													T	T		S	.	.	.	.			S												G	G	G						S		T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.												.																	.	.	.	.
Template SS confidence
										84	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110					.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																						.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	.	.	Y	G	T	D	G	P	V	A	A	L	G	L	Q	T	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																						.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.										.	.	.	.	.	.														.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.										.	.	.	.	.	.
Template Sequence		G	V	N	L	L	T	I	.	P	Y	K	G	T	A	P	A	X	.	.	.	.	.	.	N	D	L	L	G	K	Q	V	D	L	X	C	D	Q	T	T	N	T	T	Q	Q	I	T	S	G	K	V	K	A	Y	A	V	T	S	L	K	R	V	P	T	L	P	D	L	P	T	X	D	E	S	G	Y	K	G	F	E	V
Template Known Secondary structure		T							.			S	S						.	.	.	.	.	.					T	T	S	S																	T	S								S	S	S			T	T	S	T	T	S		B	T	T	T	T	T		T	T
Template Predicted Secondary structure									.										.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.							.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
									235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																						.	.																						.	.
Query SS confidence		.	.	.	.	.	.	.																						.	.																						.	.
Query Sequence		.	.	.	.	.	.	.	D	P	Q	G	V	Q	P	I	Y	A	P	A	P	V	V	R	E	S	V	L	R	.	.	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	.	.	Q	Q	L	N	A	S	I	A	V	E	G	L	D	A	K	K	V	A	A	D	Y	L	K	Q	K	G	W
Query Conservation		.	.	.	.	.	.	.																						.	.																						.	.
Alig confidence		.	.	.	.	.	.	.						.	.															.	.																						.	.											.	.	.	.
Template Conservation														.	.																																																		.	.	.	.
Template Sequence		G	I	W	H	G	X	W	A	P	K	G	T	.	.	P	K	P	V	V	D	K	L	V	K	S	L	Q	A	G	L	A	D	P	K	F	Q	E	R	X	K	Q	L	G	A	E	V	L	T	N	E	A	N	P	E	A	L	Q	A	K	V	K	Q	Q	.	.	.	.	V	P	Q	W	A	E	L	F	K	K	A	G	V
Template Known Secondary structure											T	T		.	.																												T	T					G	G	G		S												.	.	.	.											T	T
Template Predicted Secondary structure														.	.																																																		.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.					.	.	.	.	.	290	.	.	.	.	.	.	.
		304	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		298	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions