Job Description P33362 Confidence 94.60% Date Thu Jan 5 11:52:05 GMT 2012 Rank 46 Aligned Residues 169 % Identity 14% Template c2dvzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter Resolution 2.30 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																											.																		.
Query SS confidence																											.																		.
Query Sequence		P	V	K	V	G	S	K	I	D	T	E	G	A	L	L	G	N	I	I	L	Q	V	L	E	S	.	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	.	R	G	A	I	T	S	G	E	L	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A	W	K	N	A	Q	Q
Query Conservation																											.																		.
Alig confidence																											.																		.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	I	V	P	F	A	P	G	G	S	T	D	I	I	A	R	L	V	T	Q	R	X	S	Q	E	L	G	Q	P	X	V	V	E	N	K	G	G	A	G	G	A	I	G	A	S	E	A	A	R	A	E	P	D	G	Y	T	L	S	I	A	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	X	A
Template Known Secondary structure						S	S		T	T	S																		T	S										G	G	G										S		T	T	S	S								.	.	.	.	.	.	.	.	.	.	.	.	.				T
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.														.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																									.	.																																		.
Query SS confidence																									.	.																																		.
Query Sequence		G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	.	.	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	G	T	.	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	P	A	F	E	K
Query Conservation																									.	.																																		.
Alig confidence																									.	.														.	.	.	.																	.
Template Conservation																																								.	.	.	.
Template Sequence		V	N	P	A	C	R	P	K	D	L	P	Y	D	P	I	K	D	F	Q	P	V	T	N	F	A	N	T	A	N	V	V	A	V	N	P	K	F	P	.	.	.	.	A	K	D	F	K	G	F	L	E	E	L	K	K	N	P	G	K	Y	S	Y	G	S	S	G	T	C	G	V	L	H	L	X	G	E	S	F	K	X
Template Known Secondary structure							S	T	T	T		S			T	T	T	S																		T	T	S	S	.	.	.	.		S	S										T	S	T	T	T						S		T	T	S
Template Predicted Secondary structure																																								.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	G	F	K	L	G	Q	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A
Query Conservation
Alig confidence											.										.	.	.	.	.	.
Template Conservation											.										.	.	.	.	.	.
Template Sequence		A	T	G	T	D	I	V	H	V	.	P	Y	K	G	S	G	P	A	V	.	.	.	.	.	.	A	D	A	V	G	G	Q	I	E	L	I	F	D
Template Known Secondary structure				T							.			S	S						.	.	.	.	.	.						T	S	S	S
Template Predicted Secondary structure											.										.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.							.	.	.	.	.	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions