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Job DescriptionP21693
Confidence99.97%DateWed Jan 25 15:20:42 GMT 2012
Rank34Aligned Residues320
% Identity18%Templatec3tbkA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:rig-i helicase domain; PDBTitle: mouse rig-i atpase domain
Resolution2.14 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60........ .70.........80.........90.........100..
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Query Sequence  TMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDAS. . LFQTQALVLCPTRELADQVAGELRRLARFLPNTK
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Template Conservation   

 

   
   
     

   





  
   
   
           


 
   
  
               
Template Sequence  KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI
Template Known Secondary structure 


TT



TTS
T

SS




SSTTT

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   243......250.........260.........270.........280.........290.........300.........310.........320..
 
   103......110.........120.........130.........140.........150.........160.........170.........180..
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Query Sequence  ILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL
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Template Conservation      
                
 
 
   
                    

                            
Template Sequence  ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLXIFDECHNTSKNHPYNQIXFRYLDHKLGESRDP
Template Known Secondary structure 
TTTGGGS

S
TSSS

GGG
STTGGG
STT
TSS

S
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   323......330.........340.........350.........360.........370.........380.........390.........400..
 
   183......190.........200.........210.........220....
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Query Sequence  FSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation      
    
                                                                      
Template Sequence  LPQVVGLTASVGVGDAKTAEEAXQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLXKE
Template Known Secondary structure 

S



TT

STT
S


S
TT








S

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   403......410.........420.........430.........440.........450.........460.........470.........480..
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                                  
Template Sequence  TEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQXADKEEESRVCKALFLYTSHLRKYNDALIISEDAQXT
Template Known Secondary structure  TS
GGGG

S

SSST


SSS
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   483......490.........500.........510.........520.........530.........540.........550.........560..
 
   225....230.........240.........250.........260
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDA
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Template Conservation                                                                                  
Template Sequence  DALNYLKAFFHDVRETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKW
Template Known Secondary structure 

TT
GGG


TT


SS
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   563......570.........580.........590.........600.........610.........620.........630.........640..
 
   261........270.........280.........290.........300.........310.........320.........330.........340
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Query Sequence  LNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGL
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Template Conservation      .............         
      


 
     



     

  
         

 


 
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Template Sequence  IEEN. . . . . . . . . . . . . PALSFLKPGILTGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKXIQTRGRGRA. . RDSK
Template Known Secondary structure 
.............GGGTT






S


TT

TTS
SS

SS



SS


TT..TS
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   648.650. ........660.........670.........680.........690.........700........ .710..
 
   341........350.........
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Query Sequence  AISFCAPEEAQRANIISDM
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Template Conservation     

              
Template Sequence  CFLLTSSADVIEKEKANXI
Template Known Secondary structure  S
Template Predicted Secondary structure 


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   739740.........750.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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